Avir016627.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000895:357094-363167[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.7 1.3e+02 2.8 0.1 22 45 170 193 165 200 0.82 2 16 0.087 6.9 6.9 0.0 21 52 197 228 192 229 0.87 3 16 0.49 39 4.5 0.0 22 45 226 249 222 256 0.86 4 16 0.12 9.2 6.5 0.0 21 45 253 277 249 281 0.90 5 16 0.19 15 5.8 0.0 21 51 281 311 277 313 0.87 6 16 8.1 6.4e+02 0.6 0.1 23 43 314 334 311 337 0.90 7 16 0.069 5.5 7.2 0.0 21 44 340 363 332 371 0.84 8 16 0.21 17 5.6 0.0 21 45 368 392 364 395 0.91 9 16 0.0023 0.18 11.9 0.2 21 45 396 420 393 427 0.87 10 16 0.12 9.8 6.4 0.1 21 52 424 455 420 456 0.87 11 16 6.6 5.2e+02 0.8 0.1 23 43 457 477 453 482 0.89 12 16 0.2 16 5.7 0.0 21 44 483 506 475 509 0.86 13 16 0.085 6.7 6.9 0.0 21 46 511 536 507 542 0.87 14 16 0.78 62 3.8 0.0 21 49 539 567 535 570 0.86 15 16 0.25 20 5.4 0.0 21 44 567 590 565 594 0.90 16 16 0.083 6.6 6.9 0.0 21 45 595 619 591 626 0.88
Sequence Information
- Coding Sequence
- ATGGATAATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCAAGAGATCAATCTTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCAAGATTTTGATGAAGAATTAAATTCAGAGCGAAGCATCAAAAGATATTCGAGGAAACAGAATCCAAGTTGTAAAAAGCGTTTTTTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTCTTCTATGATAAATTGCTATTTTTAATCCATTTTTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTAGTAATGTAAACAAACAGATAAGTGCGGACAGTTTCACACCACAAAGTGATTTAAAAAAATATATTAAAACTCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTTACACGATCGGATAATTTAAAAATTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACGATCCAGTGATTTAAAATCTCATATTAAAATTCACACTGGCGACAAACCTTTTAAATGTAAAATATGTTCGAAATATTTCATAAATTCCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCGGTAGTTTAAAAACTCACATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACGATCCGGTGATTTAAAATCTCATATTAATATTCACACTGACGAGAAACCTTTTAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAATTCCAGTAATTTAAAAACTCATAATAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATATTTCAGAAATTCCAGTCACTTAAAAACTCATATTATAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCACACAATCCGGTTATTTAAAAACTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTAACTTAATACGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCTCACGATCCAGTGATTTAAAATCTCATATTAATATTCACACTGGCGAGAAACCTTTTAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAATTCCAGTAATTTAAAAACTCATAATAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATATTTCATAAATTCCAGTAACTTAAAAACTCATATTATAACTCACACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGCTTCACACAATCCGGTCATTTAAAAACTCATATTAAAACTCACACTGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACGATCCAGTGATTTAAAATCTCATATTAAAATTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATATTTCATAAATTCCAGTAACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCGGTAGTTTAAAAACTCACATTAAAACTCACACTGCTGAAAATCCTTTTAAATGTTAA
- Protein Sequence
- MDNSSINSVTIKSENDISSQTNQEINLEFDIKKEELHSVCDLPDFKMEFQDFDEELNSERSIKRYSRKQNPSCKKRFLSAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLIHFYIYHFFVNSKKSVNLRRNNSGTKHINRQDLSNVNKQISADSFTPQSDLKKYIKTHNGEKRFKCKICSKCFTRSDNLKIHVRTHTGEKPFKCEICLKCFTRSSDLKSHIKIHTGDKPFKCKICSKYFINSSNLKTHIRTHTDEKPFKCEICSKCFTQSGSLKTHIKTHTGEKPFKCEICSKCFTRSGDLKSHINIHTDEKPFKPFKCKLCSKCFTNSSNLKTHNRTHTDEKPFKCKICSKYFRNSSHLKTHIITHTDEKPFKCEICSKCFTQSGYLKTHIKTHTGEKPFKCEICSKCFTQSSNLIRHIRTHTDEKPFKCEICSKCFSRSSDLKSHINIHTGEKPFKPFKCKLCSKCFTNSSNLKTHNRTHTDEKPFKCKICSKYFINSSNLKTHIITHTDEKPFKCEICSKCFTQSGHLKTHIKTHTGEKPFKCKLCSKCFTRSSDLKSHIKIHTGEKPFKCKICSKYFINSSNLKTHIRTHTGEKPFKCKICSKCFTQSGSLKTHIKTHTAENPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056797;
- 90% Identity
- iTF_00056797;
- 80% Identity
- iTF_00056797;