Avir000836.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001079:340815-360961[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.6 2.1e+02 2.1 0.2 29 51 174 196 166 200 0.88 2 9 0.002 0.16 12.1 0.0 20 52 242 274 230 274 0.87 3 9 0.0075 0.59 10.3 0.0 21 51 271 301 269 302 0.87 4 9 0.05 4 7.6 0.0 21 46 299 324 296 327 0.92 5 9 0.2 15 5.7 0.0 26 51 332 357 325 358 0.84 6 9 0.0006 0.047 13.8 0.1 21 47 355 381 352 387 0.92 7 9 0.0011 0.091 12.9 0.0 21 47 411 437 407 443 0.91 8 9 0.37 29 4.8 0.0 26 47 444 465 438 471 0.87 9 9 0.2 16 5.7 0.0 25 46 499 520 493 524 0.87
Sequence Information
- Coding Sequence
- ATGGAGGTTTCTTTAGAAGAATCTATAAATTTTGGTATTAAAACCGAGGATACTGAACCTCAACTGGAAGTCCAAAAGTTTGAGATTAAAACTGAAGAACTTATAGGAAATTATTTTCCTAACAATATAGATTTTTTTATCATGAACAAAGAAAAAATTAAAAAAGAACCTTCTGATTCAAGTGAAAATAACCGAATAATGATTCCGGATTACGAAATAGAAAAGGAACTTTTACATTTTGAATCAGGAACTGAAAAATTTAAGAAAAAAACCTATTTTCATTCCAGAACACAAAATCCGAGGAAAAAATGTTATCTACCTGCAAAACTTCAATCACAACATTACTATAGAAAACTCAACCGAGCATGTTCGTTTTGTGGACACTTTTTTCTCAATAATTTACTATTTTTGATTCACTTTTATGTGCATCATTTCGTAAAAAATACTGGGAAAAGTAACAAGTGTTCTTATAAAAAATCAATGAATAATTTGACTAAAGAAATGAAAATTCAACAAAAAATTTGCACAGATATATTTCAGAAAAATCGTCATTTAAAAAAACATGTGAGAGGTGAACATTGTTCAAAAATATCTAAACCAACAAAACATTTTGCTTTAAAGCAACGTGTTAGAAATCGCACTACTGAAAAACAATTGAATTGTACAATATGTTCAAAACCTTTTTTATATCAAAGTACTTTAAAATTACATATGAGAAAACACACTGGTGAAAGACCTTACAGTTGTGAAATTTGTTTAAAGAGTTTTAAAAAAGGAGATAATTTAAAAAAACACATGAATCTTCATACTGGTGAAAAACCATTTAAATGTGGAATTTGTTCCAAGAGTTTCAAATACAGCAGTAATTTAAAACAACACATGAATATTCATACCGGTGAAAAACCATTTCGATGTCAAATTTGTTTGAAATCTTTCACACAATTGGGAAACCTAAAAACACATATGAAACTGCACACTGGTGAAAATTTATTTAAATGTGAAGTTTGTTCCAAGAGTTTCACACAGAGCGGTAATTTAAAAACACACATGAATATTCATACCGGTGAAAAACCATTTCGATGTCAAATTTGTTTTAAATGTTTCACAAATTCAGGAAACCTAAGAACACATATGAAACTGCACACTGGTGAAAAATTATTCAAATGTGAAATTTGTTCCAAGAATTTCACATACAGCAGTACTTTAAAAACACATATGAAACTTCACACTGGCGAAAGGCCATTCACGTGTGAAATTTGTTTCAAGACTTTCATAAAAAGCAGTAATTTTAAAACACACATGAATCTTCACACTGGTGAAAAAATATTTAAGTGTGAAGTTTGTTCAAAAATATTTACACAAAGCGGTACTTTGAAAACACACATGAATCTTCACACTGGTGAAAAAACATTTAAGTGTGAAATTTGTAATAAGAGTTTCACACAAAAAAGTTATATAAAAATACACATGAATCTTCACACTGGTGAAAAATTATTTAACTGTGAAATTTGTTCTAAGAGTTTTCCACACAGTAATAACTTAAAAAAACACTTAAAAGTTCACGCTCGGCAAAACCGTTTAGTACAACAAAATAATCTAGGTGACAGAAACTAA
- Protein Sequence
- MEVSLEESINFGIKTEDTEPQLEVQKFEIKTEELIGNYFPNNIDFFIMNKEKIKKEPSDSSENNRIMIPDYEIEKELLHFESGTEKFKKKTYFHSRTQNPRKKCYLPAKLQSQHYYRKLNRACSFCGHFFLNNLLFLIHFYVHHFVKNTGKSNKCSYKKSMNNLTKEMKIQQKICTDIFQKNRHLKKHVRGEHCSKISKPTKHFALKQRVRNRTTEKQLNCTICSKPFLYQSTLKLHMRKHTGERPYSCEICLKSFKKGDNLKKHMNLHTGEKPFKCGICSKSFKYSSNLKQHMNIHTGEKPFRCQICLKSFTQLGNLKTHMKLHTGENLFKCEVCSKSFTQSGNLKTHMNIHTGEKPFRCQICFKCFTNSGNLRTHMKLHTGEKLFKCEICSKNFTYSSTLKTHMKLHTGERPFTCEICFKTFIKSSNFKTHMNLHTGEKIFKCEVCSKIFTQSGTLKTHMNLHTGEKTFKCEICNKSFTQKSYIKIHMNLHTGEKLFNCEICSKSFPHSNNLKKHLKVHARQNRLVQQNNLGDRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056905;
- 90% Identity
- iTF_00056905;
- 80% Identity
- iTF_00056905;