Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001169:109976-112678[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.05 4 7.6 0.1 22 46 171 195 165 201 0.83

2 17 0.29 23 5.2 0.0 21 44 198 221 194 226 0.91

3 17 0.33 26 5.0 0.0 22 44 227 249 222 253 0.90

4 17 0.0088 0.69 10.1 0.1 21 44 254 277 249 281 0.90

5 17 0.0067 0.53 10.4 0.1 21 48 282 309 277 313 0.86

6 17 1.9 1.5e+02 2.6 0.0 21 45 310 334 306 337 0.88

7 17 0.068 5.4 7.2 0.1 21 52 338 369 336 369 0.89

8 17 0.19 15 5.8 0.0 20 45 365 390 362 398 0.87

9 17 5.7 4.5e+02 1.0 0.0 21 52 394 425 389 425 0.85

10 17 0.2 16 5.7 0.1 20 44 421 445 414 449 0.92

11 17 0.35 28 4.9 0.1 21 45 450 474 445 481 0.85

12 17 0.099 7.8 6.7 0.1 21 44 478 501 474 506 0.90

13 17 0.12 9.5 6.4 0.1 21 48 506 533 501 537 0.85

14 17 1.5 1.2e+02 2.9 0.0 21 44 534 557 530 561 0.90

15 17 0.025 1.9 8.6 0.0 21 46 562 587 551 593 0.82

16 17 1.1 87 3.3 0.1 21 44 590 613 587 617 0.89

17 17 0.00022 0.018 15.2 0.3 21 48 618 645 614 645 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.05	4	7.6	0.1	22	46	171	195	165	201	0.83
2	17	0.29	23	5.2	0.0	21	44	198	221	194	226	0.91
3	17	0.33	26	5.0	0.0	22	44	227	249	222	253	0.90
4	17	0.0088	0.69	10.1	0.1	21	44	254	277	249	281	0.90
5	17	0.0067	0.53	10.4	0.1	21	48	282	309	277	313	0.86
6	17	1.9	1.5e+02	2.6	0.0	21	45	310	334	306	337	0.88
7	17	0.068	5.4	7.2	0.1	21	52	338	369	336	369	0.89
8	17	0.19	15	5.8	0.0	20	45	365	390	362	398	0.87
9	17	5.7	4.5e+02	1.0	0.0	21	52	394	425	389	425	0.85
10	17	0.2	16	5.7	0.1	20	44	421	445	414	449	0.92
11	17	0.35	28	4.9	0.1	21	45	450	474	445	481	0.85
12	17	0.099	7.8	6.7	0.1	21	44	478	501	474	506	0.90
13	17	0.12	9.5	6.4	0.1	21	48	506	533	501	537	0.85
14	17	1.5	1.2e+02	2.9	0.0	21	44	534	557	530	561	0.90
15	17	0.025	1.9	8.6	0.0	21	46	562	587	551	593	0.82
16	17	1.1	87	3.3	0.1	21	44	590	613	587	617	0.89
17	17	0.00022	0.018	15.2	0.3	21	48	618	645	614	645	0.91

Sequence Information

Coding Sequence: ATGGATAATTTTTCAATAAATTCTGTCACCATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATGATGAGATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATAGAATTTCCAGATTTTGATGAAGAATTAAATTCAGAGCGAAGCATCAAAAGATATTCGAAGAAACAGGATCAAAATTATAAAAAACGTTTCCTATCTGCGGCAACAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTATTATTTTTAAACCATTATTATATTTACCACTTTTTTGCTTATTCGAAAAAATGTGTTAACTTAAGAAGGAATAATTCTGACATAAAACATATTAACCGACAAAAAAATCTTAGTAATGTAAAGAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCAATAATTTAAAAAGTCATATTAAAACTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAACTCATATTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAAAAGTCATGTTAGAACTCACACTGGTGAGCAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGACTCCATTGGATTAAAAAGTCATATTAGAATTCACACTGGTGAGCAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCAAACACTCCAGTAGTTTAAAATCTCATATTAAAATTCACACTAGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCAAACACTTCAGTAGTTTAAAATCTCATATTAAAATTCACACTAGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGGCTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTTATACAATCCAGTAGCTTAATAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACATTCCAGTAATTTAAAAAGTCATGTTAGAACTCACACTGGTGAGCAAACTTTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACTGGGGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATTGGGTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCATAAATTCCAGTAATTTAAAAAATCATATTAAAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTTGAAATGTTTCATAAATTCCAGTCATTTAAAAAATCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATCCAGTAACTTAAAACGACATATTAGAACTCAACACTGA
Protein Sequence: MDNFSINSVTIKSENDISSQTNDEINIEFDIKKEELHSVCDLPDFKIEFPDFDEELNSERSIKRYSKKQDQNYKKRFLSAATKWQPHFGKFYGTCSSCGKFFYDKLLFLNHYYIYHFFAYSKKCVNLRRNNSDIKHINRQKNLSNVKKQIRADSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTQSNNLKSHIKTHTDEKPFKCKLCSKCFTKSSNLKTHIRTHIDEKPFKCKICSKCFTQLGNLKSHVRTHTDEKPFKCKICSKCFTQSSNLKSHVRTHTGEQPFKCKICSKCFTQSGSLKSHIRIHTGEKPFKCKICSKCFTDSIGLKSHIRIHTGEQPFKCKLCSKCFKHSSSLKSHIKIHTSEKPFKCKLCSKCFTQLGNLKSHVRTHTDEKPFKCKLCSKCFKHFSSLKSHIKIHTSEKPFKCKLCSKCFTQLANLKSHVRTHTDEKPFKCKICLKCFIQSSSLITHIRTHTDEKPFKCKICSKCFTHSSNLKSHVRTHTGEQTFKCKICSKCFTQSGSLKSHIRIHTGEKPFKCKLCSKCFTQLGNLKSHVRTHTDEKPFKCKICLKCFINSSNLKNHIKTHTDEKPFKCKICLKCFINSSHLKNHIRTHTGEKPFKCKICSKCFTQSSNLKRHIRTQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056798;
90% Identity: iTF_00056798;
80% Identity: iTF_00056798;