Avir016430.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000871:35577-39089[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.064 5 7.3 0.5 22 44 168 190 160 194 0.85 2 19 0.012 0.93 9.6 0.3 21 45 195 219 191 228 0.85 3 19 9.1 7.2e+02 0.4 0.2 22 44 224 246 219 250 0.85 4 19 0.021 1.7 8.8 0.2 4 48 234 278 231 282 0.75 5 19 0.08 6.4 7.0 0.1 21 46 279 304 275 309 0.90 6 19 2.4 1.9e+02 2.2 0.4 23 51 309 337 303 340 0.83 7 19 0.0037 0.29 11.3 0.2 21 44 363 386 357 390 0.90 8 19 0.011 0.86 9.8 0.1 21 45 391 415 387 426 0.84 9 19 0.62 49 4.1 0.1 20 48 446 474 428 479 0.78 10 19 0.0025 0.2 11.8 0.1 21 45 503 527 499 534 0.86 11 19 0.011 0.89 9.7 0.1 21 45 531 555 527 565 0.84 12 19 1.3 99 3.2 0.1 20 45 586 611 568 615 0.79 13 19 0.012 0.96 9.6 0.1 21 45 615 639 611 650 0.84 14 19 0.7 55 4.0 0.0 21 49 671 699 656 704 0.80 15 19 0.0036 0.28 11.3 0.2 21 44 727 750 720 754 0.90 16 19 0.01 0.81 9.8 0.1 21 45 755 779 750 790 0.84 17 19 0.61 49 4.1 0.0 20 48 810 838 792 843 0.78 18 19 1.4 1.1e+02 3.0 0.2 21 46 839 864 834 871 0.86 19 19 9.8 7.8e+02 0.3 0.1 21 46 867 892 863 898 0.83
Sequence Information
- Coding Sequence
- ATGGATGATTTGTCAATAAATTCTGTCACTATTAAAAGTGAAATTTTAATCAGTGATAATGATATTTTAAGTCAAACTAATCATGAAATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTACCAGATTTTGATGAAGAATTAAATTTAGAGCGAAGCATCAAAAAATATTCGAGGAAACAGGATCTAAGTTGTAAAAAACGTTTCCTATCTGCGGCAACAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTATTATATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAGCTTAAAAAGGAATAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATGTAAAGAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGACAATGGCGAAAGACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCAAATAATTTAAGAATTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAGTGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTGAATTCTGTTTGAAATGTTTCACAGAATCCAGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACGTTTTAAATGTAAAATATGTTCGAAATGTTTCACACTATCCTGTAATTTAAAAAGTCATATTAGGATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAACTCAGTGACTTACAAAATCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCAAATAATTTAAGAATTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATTCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAACTCAGTGACTTACAAAATCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCAAATAATTTAAGAATTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATTCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGGGAAATGTTTCAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATTCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAACTCAGTGACTTACAAAATCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCAAATAATTTAAGAATTCATGTTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATTCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACTATCCTGTAATTTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACACTCCGTTAGTTTAAAAGTTCATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTTAA
- Protein Sequence
- MDDLSINSVTIKSEILISDNDILSQTNHEINIEFDIKKEELHSVCDLPDFKMELPDFDEELNLERSIKKYSRKQDLSCKKRFLSAATKWQPHFGKFYGTCSSCGKFFYDKLLFLNHYYIYHFFANSKKSVSLKRNNSGIKHINRQKNLSNVKKQIRADSFTQQSDNGERRFKCKICSKCFTQSNNLRIHVRTHTGEKPFKCKICSKCFTQSCNLKSHIRTHTDEKHFKCKICAKCFKHSSTLKTHIRTHTDEKPFKCKICSKFFTQSGSLKSHIRIHTDEKPFKCEFCLKCFTESSNLNRHIRIHTDEKRFKCKICSKCFTLSCNLKSHIRIHTGEKPFKCKLCSKCFTQLSDLQNHIRTHTGEKPFKCKICSKCFTQSNNLRIHVRTHTGEKPFKCKICSKCFTQSGNLKSHIRTHTDEKHFKCKICAKCFNHSSTLKTHIRTHTDEKPFKCKICSKFFTQFGSLKSHIRIHTDEKPFKCKLCSKCFTQLSDLQNHIRTHTGEKPFKCKICSKCFTQSNNLRIHVRTHTGEKPFKCKICSKCFTQSGNLKSHIRTHTDEKHFKCKICAKCFNHSSTLKTHIRTHTDEKPFKCKICSKFFTQFGSLKSHIRIHTDEKPFKCKICSKCFTQSGNLKSHIRTHTDEKHFKCKICGKCFNHSSTLKTHIRTHTDEKPFKCKICSKFFTQFGSLKSHIRIHTDEKPFKCKLCSKCFTQLSDLQNHIRTHTGEKPFKCKICSKCFTQSNNLRIHVRTHTGEKPFKCKICSKCFTQSGNLKSHIRTHTDEKHFKCKICAKCFNHSSTLKTHIRTHTDEKPFKCKICSKFFTQFGSLKSHIRIHTDEKPFKCKLCSKCFTLSCNLKSHIRTHTGEKPFKCKLCSKCFTHSVSLKVHIRTHTNEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056789;
- 90% Identity
- iTF_00056789;
- 80% Identity
- iTF_00056789;