Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000450:473333-492146[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 2 1.5e+02 2.5 0.1 25 51 236 262 226 264 0.81

2 24 4.9 3.9e+02 1.3 0.2 21 45 260 284 252 287 0.83

3 24 0.00016 0.013 15.6 0.3 21 44 288 311 278 315 0.91

4 24 0.0039 0.31 11.2 0.4 21 45 316 340 311 344 0.85

5 24 0.00022 0.018 15.2 0.3 18 45 341 368 340 375 0.86

6 24 0.37 29 4.9 0.0 21 52 372 403 368 404 0.88

7 24 0.34 27 5.0 0.0 22 44 401 423 396 427 0.91

8 24 0.16 13 6.0 0.1 21 46 428 453 424 459 0.86

9 24 0.099 7.9 6.7 0.1 21 44 456 479 452 487 0.88

10 24 1.5 1.1e+02 3.0 0.1 21 45 484 508 481 515 0.86

11 24 0.7 55 4.0 0.0 21 52 512 543 508 545 0.88

12 24 0.84 66 3.7 0.0 21 49 540 568 536 572 0.85

13 24 4.2 3.4e+02 1.5 0.0 21 44 568 591 566 595 0.89

14 24 0.0052 0.41 10.8 0.1 21 45 596 620 591 627 0.87

15 24 0.063 4.9 7.3 0.5 21 45 624 648 620 653 0.90

16 24 7 5.6e+02 0.8 0.1 23 52 753 782 748 782 0.86

17 24 0.0033 0.26 11.4 0.1 14 46 771 804 761 810 0.80

18 24 5.1 4e+02 1.2 0.0 21 44 807 830 803 834 0.86

19 24 0.17 13 5.9 0.1 21 44 835 858 827 862 0.89

20 24 0.34 27 5.0 0.1 21 48 863 890 858 894 0.86

21 24 0.54 43 4.3 0.2 22 43 892 913 889 917 0.91

22 24 0.2 16 5.7 0.1 17 45 914 943 911 952 0.80

23 24 0.08 6.3 7.0 0.1 21 46 975 1000 964 1007 0.85

24 24 5 3.9e+02 1.2 0.1 21 45 1003 1027 999 1030 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	2	1.5e+02	2.5	0.1	25	51	236	262	226	264	0.81
2	24	4.9	3.9e+02	1.3	0.2	21	45	260	284	252	287	0.83
3	24	0.00016	0.013	15.6	0.3	21	44	288	311	278	315	0.91
4	24	0.0039	0.31	11.2	0.4	21	45	316	340	311	344	0.85
5	24	0.00022	0.018	15.2	0.3	18	45	341	368	340	375	0.86
6	24	0.37	29	4.9	0.0	21	52	372	403	368	404	0.88
7	24	0.34	27	5.0	0.0	22	44	401	423	396	427	0.91
8	24	0.16	13	6.0	0.1	21	46	428	453	424	459	0.86
9	24	0.099	7.9	6.7	0.1	21	44	456	479	452	487	0.88
10	24	1.5	1.1e+02	3.0	0.1	21	45	484	508	481	515	0.86
11	24	0.7	55	4.0	0.0	21	52	512	543	508	545	0.88
12	24	0.84	66	3.7	0.0	21	49	540	568	536	572	0.85
13	24	4.2	3.4e+02	1.5	0.0	21	44	568	591	566	595	0.89
14	24	0.0052	0.41	10.8	0.1	21	45	596	620	591	627	0.87
15	24	0.063	4.9	7.3	0.5	21	45	624	648	620	653	0.90
16	24	7	5.6e+02	0.8	0.1	23	52	753	782	748	782	0.86
17	24	0.0033	0.26	11.4	0.1	14	46	771	804	761	810	0.80
18	24	5.1	4e+02	1.2	0.0	21	44	807	830	803	834	0.86
19	24	0.17	13	5.9	0.1	21	44	835	858	827	862	0.89
20	24	0.34	27	5.0	0.1	21	48	863	890	858	894	0.86
21	24	0.54	43	4.3	0.2	22	43	892	913	889	917	0.91
22	24	0.2	16	5.7	0.1	17	45	914	943	911	952	0.80
23	24	0.08	6.3	7.0	0.1	21	46	975	1000	964	1007	0.85
24	24	5	3.9e+02	1.2	0.1	21	45	1003	1027	999	1030	0.90

Sequence Information

Coding Sequence: ATGGATAATTCTTCAATAAATTTTGTCACTACTAAAAGTGAAATGTTAATTAGTGGTGAAAATGATAAAACTAGAATAGATACTTCAAATCAAACTGATCATGAGATTAATCTTAAATTTGACATTAAAAAAGAAGAATTGCACTCTATTTGCGATTCTCCGGATATTAAAATAGAATTTCAAGATGATATGTTTAAAGAAGAACCGAATCTCGAATGCGAAAGCTCTCAACAATTCGTAATAATGGATAATTCTTCAATAAATAAAAGTGAAATAGATATTTCAAGTCAATATAATCATGAGATGAATCTTGAATTTGAAATTAAAAAAGAAAAATTGCACTCTGTTTGCGATATACTGGATTTTAAAGTGGAGTTTCAAGAATTTAATAAAGAATTAAGGTCAGAGCGACGCATCAAAAAATATTCCAGGAAACAGAATCCAGTTAGTAAAAAGCGTATCTTATCTGCAGCAAAAAAATGGCAACCTCACTTTGGGAAATTCTATGGAACATGTTCCTCTTGTGGAAAATTTTTCTATGATAATTTGCTATTTTTAAAACATTTTTATATTTACCACTTCTTAGTTAATTATAAAAAATCTGTTAACAATTCTGCTACGAAACACACTAACCCAAAAGATTTTGGTCATTTAAAATCCAGTCATTTAAAAACGAATATTAGAACACACACTGACGAAAAACTTTTTAAATGTAAAATTTGTCCAAATTCTTACACACAAAATAATAATTTAAAAAGTCATATTAGAACTCACACTACTCAGAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACACAATATAATACTTTAAAAGTTCATATCAGAATTCACACTGGCGAAAAACCTTTTAAATGTAATATATGTACAAAATGCTTTAGACAATCCCAAAATTTAAAAAAGCATATTAGAAGTCACACTGGTGAAAAACCGTTCATTTGTAAAATTTGTTTAAAATGTTTTAGACAATCCCAAACTTTAAAAATACATATTAGAAGACATACTGGTGAAAAACCTTTCATATGTGAAATTTGTTCAAAATGTTTTAGACAATCACAAAATTTAAAAATGCATATTAGAGCTCACACTGATGAAAAACCATTTAAATGTAAAATTTGTTTGAAATGTTTCACACATTTTCGTAGTTTAAAAACTCATGTTAAAACTCACACTATTGAGAAACCTTTTAAATGTAAAATTTGCTCTAAATCTTTCAGAAAATCTACTTATTTAAAATATCATATTAGAACTCACACTGGCGAAAAGCCTTTTAAATGTCAATTTTGTTCAAAATGTTTTATACAATCCGGTAAGTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTTAGGTGTGAAATTTGTTTGAAATGTTTCACACAATCCGATCATTTAAAACAACATATTATAACTCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTACACTCAAAAAGGTCACTTAAAACAACATATTAGAACTCACACAGGTGAAAAACCATTTAAATGTAAAATTTGTTCGAAATGTTTTACATATTCTAGTAGTTTAAAAACTCATATTAAAACTCACACTGTTGAGAAACCATTTAAATGTAAAATTTGTTCGAAAGGTTTCACACAATCTGATAGTTTAGAAATTCATATTAGAATTCACACTGGGGAGAAACCTTTTAAATGTAAAATTTGTCCGAAATCTTTTACAAAATCTGCTGATTTAAAAGTTCATATTAGAACTCACACTGGTGAAAAACCTTTTGAATGTAAAATTTGTTTAAAATGTTTTAAACAATCCGATAAATTAAACAGGCATATTAGAACTCACACTGATGAAAAACCTTTCAGATGTGAAATTTGTTTGAAATGTTTCAGACGATCCGACCATTTAAAACAACATATGAGAACTCACATTAATGAAAATCCTTTTAAGTGTTTCCTATCCGTGGCAAACAAATGGCAACCTTACATTGGAAAATTCTATGGAACATGTTCTTCTTGTGGAAAATTTTTCTGTGATAAATTGCTACTTTTAAAACATTTTTATATTTACCACTTTTTTGTTAATTCTAAAAAATCTGTTAACTTTAAAAGGAATAATTCTGCCACAAAACAGATCAACCCACAAGATCTTAGTTATTTAAAGGAACAGATAAGAACTCACACTTTCACACGACAAAGTGGTTTAAAAAAGCAGATTAAAACCCACACTGGCAAAAAACCTTATAAATGTAAGACTTGTTCGAAATGTTTCACACACACTGGTAATTTAAAACAGCATATTAGAAGTCACACTTACGAAAAACCGTTTAAATGTAAAATATGTACGAAATGTTTCACACAATCCGGTAATTTAAAAGCTCATATTAAAACTCACACTGGCGAGAAACCATTTAAATGTAAAATTTGTTCGAAATGTTTCGCACAATTGAGTAGTTTAAAAGGTCATATTAGAACTCACACTGGCGAGAGACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCAGTAGTTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGATATGTTTCACTCGTTCCGATAAGTTAAACACTCATATTGAAACCCATACTGAAGAAAAACCTTATAAATGTAAAATTTGTTCGAAATGTTTCACATATTCCAATAACTTAAAAACTCATACTAGAAGTCACACTAACGAGAAACCTTTTAAATGTAACATTTGTTTGAAATGTTTCACAAACTCCAGTAGTTTAAAAGCTCATTTTAGAACTCACACTGGTGAAAAACCTTTTAAATGCAAAAATTGTTCAAAATCTTTCATACGATCCAGTCACTTAAAAACTCATATTAGAACTCACACAGGCGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCTAGTAGTTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAACTATGTTCGAAATGTTTCACACGATCAGAAAAGTTAAATATTCATATTGAAACCCACAAAAAGGTTACTTAA
Protein Sequence: MDNSSINFVTTKSEMLISGENDKTRIDTSNQTDHEINLKFDIKKEELHSICDSPDIKIEFQDDMFKEEPNLECESSQQFVIMDNSSINKSEIDISSQYNHEMNLEFEIKKEKLHSVCDILDFKVEFQEFNKELRSERRIKKYSRKQNPVSKKRILSAAKKWQPHFGKFYGTCSSCGKFFYDNLLFLKHFYIYHFLVNYKKSVNNSATKHTNPKDFGHLKSSHLKTNIRTHTDEKLFKCKICPNSYTQNNNLKSHIRTHTTQKPFKCKICSKCFTQYNTLKVHIRIHTGEKPFKCNICTKCFRQSQNLKKHIRSHTGEKPFICKICLKCFRQSQTLKIHIRRHTGEKPFICEICSKCFRQSQNLKMHIRAHTDEKPFKCKICLKCFTHFRSLKTHVKTHTIEKPFKCKICSKSFRKSTYLKYHIRTHTGEKPFKCQFCSKCFIQSGKLKRHIRTHTGEKPFRCEICLKCFTQSDHLKQHIITHTDEKPFKCKICSKCYTQKGHLKQHIRTHTGEKPFKCKICSKCFTYSSSLKTHIKTHTVEKPFKCKICSKGFTQSDSLEIHIRIHTGEKPFKCKICPKSFTKSADLKVHIRTHTGEKPFECKICLKCFKQSDKLNRHIRTHTDEKPFRCEICLKCFRRSDHLKQHMRTHINENPFKCFLSVANKWQPYIGKFYGTCSSCGKFFCDKLLLLKHFYIYHFFVNSKKSVNFKRNNSATKQINPQDLSYLKEQIRTHTFTRQSGLKKQIKTHTGKKPYKCKTCSKCFTHTGNLKQHIRSHTYEKPFKCKICTKCFTQSGNLKAHIKTHTGEKPFKCKICSKCFAQLSSLKGHIRTHTGERPFKCKICSKCFTQSSSLKTHIRTHTGEKPFKCKICSICFTRSDKLNTHIETHTEEKPYKCKICSKCFTYSNNLKTHTRSHTNEKPFKCNICLKCFTNSSSLKAHFRTHTGEKPFKCKNCSKSFIRSSHLKTHIRTHTGEKPFKCEICSKCFTQSSSLKTHIRTHTGEKPFKCKLCSKCFTRSEKLNIHIETHKKVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056790;
90% Identity: iTF_00056790;
80% Identity: iTF_00056790;