Basic Information

Insect: Altica viridicyanea
Gene Symbol: SCRT1_2
Assembly: None
Location: GWHAMMQ00001229:23777-70870[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00059 0.48 10.5 0.5 15 38 270 290 264 296 0.86

2 5 0.047 38 4.4 0.6 17 28 303 314 293 329 0.78

3 5 0.0072 5.8 7.0 0.3 17 28 329 340 318 352 0.81

4 5 0.00033 0.26 11.3 0.3 19 41 359 378 347 380 0.88

5 5 0.045 36 4.5 1.6 14 43 382 408 378 409 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00059	0.48	10.5	0.5	15	38	270	290	264	296	0.86
2	5	0.047	38	4.4	0.6	17	28	303	314	293	329	0.78
3	5	0.0072	5.8	7.0	0.3	17	28	329	340	318	352	0.81
4	5	0.00033	0.26	11.3	0.3	19	41	359	378	347	380	0.88
5	5	0.045	36	4.5	1.6	14	43	382	408	378	409	0.88

Sequence Information

Coding Sequence: ATGCCGCGCTGTCTTATGGCAAAAAAATTCAAGGCCTACACATGGCCAACGGAGAGGACGGACTCCCCTGAAGAGGAAGAAGAAGAAATTGATGTTGTCGGAGATTCGCCAGCGACGGCGACCTCTTGTTGGGGACCCTCAAGTCCCACTGAGGGGGCAACAGCGCCCAGCCCTCCACCCACTTCACCACACGGGACTACTTTACTCTACAACGGCTATCTCCATGAAATCTCACCTTCAAGCTACACAACTTTTGTTTCAAAATCTGAGCTACCTAATCCTCCACAACCATCTTACATTACTCTAAGAAGTGCTGATGAAACAAATGAAGTACGGTATGAATACACACCTAGTCATGTTCCTACGAAACATAAAAAGTCTTTAGCAATGACGTATACCAGTACTGGAACGGCATTAAGTTTACCACCGAAGAAAAAAGATATTTACCGACCGTATTCACTTGAAGACAAACCAGCTCCTCCATTTTTTCACCATGCAATTCGGGTACCAGCTGAAGAAGATCTTCATGCTGCTCATGCAATTTTGGATTTAAGTGCTTCAACAACAGTTTTTCTACCTCCTCCTGCTCAGATACAGATTCAAGAGCAACATCATACTATTGAGTTGCAGCAGGAGGCATCCGAAACTAATCAACCTTTGAGATCTGTAACACCAGGTGTCAAACCAGTAAAAACTGTTGCTTATACTTACGAAGCATTTTTTGTAAGTGATGGTAGATCGAAGAAAAAGCTTGATCCTGATGATCCAGCATCAATAGTTGAAGCTGTAAAAGTACCTCCTGAGAAGCCTAAATATACTTGTAGCGAATGTGGGAAGCAATACGCGACATCCAGTAACTTATCAAGACACAAACAAACCCATCGCAGTTTGGATTCTCAATCCGCTAAAAAGTGTATGACATGTGGTAAGGCTTACGTCAGTATGCCAGCGTTAGCTATGCATGTTCTTACTCATAAGCTAGCGCATCGATGCGGCGTCTGTGGTAAACAGTTTTCTAGACCTTGGTTATTGCAAGGTCATCTCAGATCACATACAGGAGAGAAGCCTTACGGCTGCGCACATTGTGGCAAAGCTTTTGCGGATAGATCAAATTTACGCGCACATATGCAAACGCATTCTGCTGATAAAAATTTTGAATGCCCTCGGTGCCATAAAACTTTCGCGCTTAAATCTTACTTAAACAAGCACTTGGAGTCAGCTTGTCTTAAAGAGGAAGTTATAACTTCAGTAGCTTGTAAGGAAGACCCAACTTTAAAAGAAATTACAATAGCCACGCCTGTTCCCGTAAGAGTTTATGCGGGGTGA
Protein Sequence: MPRCLMAKKFKAYTWPTERTDSPEEEEEEIDVVGDSPATATSCWGPSSPTEGATAPSPPPTSPHGTTLLYNGYLHEISPSSYTTFVSKSELPNPPQPSYITLRSADETNEVRYEYTPSHVPTKHKKSLAMTYTSTGTALSLPPKKKDIYRPYSLEDKPAPPFFHHAIRVPAEEDLHAAHAILDLSASTTVFLPPPAQIQIQEQHHTIELQQEASETNQPLRSVTPGVKPVKTVAYTYEAFFVSDGRSKKKLDPDDPASIVEAVKVPPEKPKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCMTCGKAYVSMPALAMHVLTHKLAHRCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECPRCHKTFALKSYLNKHLESACLKEEVITSVACKEDPTLKEITIATPVPVRVYAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057158; iTF_00459250; iTF_00026357; iTF_00026258; iTF_00736120; iTF_00387430; iTF_00387537; iTF_00437458; iTF_00792467; iTF_00792363; iTF_00912543; iTF_00911392; iTF_01106689; iTF_01047740; iTF_01047630;
90% Identity: iTF_00057158;
80% Identity: iTF_00057158;