Avir015147.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- dmd-4
- Assembly
- None
- Location
- GWHAMMQ00000748:42640-47933[-]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-25 3.2e-21 74.9 11.5 1 47 10 56 10 56 0.98 2 2 0.02 87 3.1 0.7 29 37 241 249 239 254 0.83
Sequence Information
- Coding Sequence
- ATGGCATCACATATTTCCAAACCAGGTAGGGTTCCGAAATGTGCACGGTGTAGAAATCATGGAATGATTTCTACCTTAAGAGGACATAAAAAGCAATGTATTTATAAAAACTGTTCATGCCAAAAGTGCGGTTTAATTAAAGAAAGACAACGAATTATGGCAGCACAGGTTGCATTAAAAAGACAACAAGCTGCAGAGGATGCTATAGCATTACATTTAGCAGCAAAAGATAGTGGAACAACCTATGAATATCTTCCTCCAGGTCGAATTTTTGGTATGCAGATAACTTCACCAGAGCCGGAGTGTTCAGGAATTAAAAGTCAGTGTACAAATACATCCGATTCAAATGAACAGGAAGATATTGAAGTCAGTCAAGCTTCAATCGATATGTTAGGCCAACTTTTTCCAAATAAAAAGCGTACTGTATTAGAGTTAGTTTTTAAAAAGGTAAGTTTCATTGCAATTTTAAAAGCAATCGAGCATGTCAACATTAACAATCAAGAAACCTCCGAGACACCATCTTCAACTGAAGAATTATCATCAGCTTTTCGTCCAGTAAATAGTACCAATAAATCTACCAAACCTTATATAATACCACATTCTGGGAGTTTTTCTTTAATTCCTGCTAACAAAACATTCAGTTTGTATCCATTTTGGCCGTTATTTAACTATCAATTACCACAACCAATACTACCTAGTCCAGTATTAGTTCAGGGTATTTGCGAATGTGAACAGTGTAGAGCTACTGGTAGGCTAAATGTTGGTGCTGGATAA
- Protein Sequence
- MASHISKPGRVPKCARCRNHGMISTLRGHKKQCIYKNCSCQKCGLIKERQRIMAAQVALKRQQAAEDAIALHLAAKDSGTTYEYLPPGRIFGMQITSPEPECSGIKSQCTNTSDSNEQEDIEVSQASIDMLGQLFPNKKRTVLELVFKKVSFIAILKAIEHVNINNQETSETPSSTEELSSAFRPVNSTNKSTKPYIIPHSGSFSLIPANKTFSLYPFWPLFNYQLPQPILPSPVLVQGICECEQCRATGRLNVGAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056611;
- 90% Identity
- iTF_00056611;
- 80% Identity
- -