Avir001036.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001107:57424-59458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-11 1.3e-08 34.3 0.1 1 41 18 59 18 62 0.88 2 2 5.6 1.8e+03 -1.3 0.1 12 23 138 150 137 151 0.73
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATATCTGCGAAAAGTAAATGCTTCTTTACGAGCTAGTTGGACGGAAGAACAGTTGCAAACAGCTGTGGAAAAGGTACAAGCGGGAGAAATAAGCATGCGTGAAGCACATAGGCGCTATAACGTTCCTCCGAGAACTTTAAAACGTAGAATGAATACGGGAAGTTATGAAAAAAGAGGTCTTGGTCCACAAGGAATTTTGGGAAAGGAAAATGAAAAAAGATTGGTTTCCCATATTCAAAGATTGGTTGCTGCTGGTTTTGTTCCAGATAGAAAAGCCGTCAGATCACTTGCATACAAATTTGCGCAGAAATTAAACATCGACCACCATTTCTCAGCGGAGAAAGAAATGGCGGGAAATGCATGGCTAAAATCGTTTTTAGAAAGAAATCCCGAATTAGCCATAAGACAAGCTGAGGGCCTTTCTCTCTCTAGAGCTCAGGGAATGAACAAAGAAGATGTGAAAGGATTTTTTGACATTTTGGAAAAGGTAATGTCGGAAAATGATTTGCTAGAGAAACCATCTCATATTTTCAATATGGATGAAACAGGCGTACAGCTGATCAATAAGCCTGGAAAAGTCATAACTACGAAGGGTGTCAAAGCAGTGCGTGTACTCACCTCAAAAGAAAGAGGAGAAAATGTGACGGTAATAGGTTGTTGCAGTGCCGATGGTAAATGCTTACCACCGGTACTAATTTTTAAGGGCGTCAATAGGAAACCGGAATTTTCAGACGGATTAACAGGGGGGTTCAAAGTTTACATGAACAAGAAATCGTCCTTTATTAATTCTGAATTATTTCTGAAGTGGCTGAAGGAGGTATTTATTCCCCATAAACCATCAGGCAAATGTTTGCTAATTTTGGATGGACATACATCGCATAGTACGGATATCGATATGCTTGAAATCGCAGACAATAATGATATCATCATTTTGTGCCTACCAAGCCACTGCACTCAAGCCCTTCAGCCATTAGATAGAAGCTTTTTCGGCCCTTTTAAGACTTATTTCTTCCAGGAGGCCCAACTGTGGATGAAAAATCATTCCAACCGTAATTTCACTAGGTACCGAGCTGGTGAGGTAATAGGAAGAGCATGGTTAAGGGCAGCTTCTGCGGCCAATGCAGTAAACGGCTTTCGAGCAACAGGAATCTACCCACTTAACCCTAATGCGATCCCAGATCACTTCTTTTCTTTACAAAATACTGTGGAAAATCCATCTGGACCACACGATATAAACACCAGCCAACTTCAAGGTACTTCAAGTACTTCTTCAATAAATGCACCACGCAGTGCAAGTGGGATAAATAGCATTAACGAATCTCAAGCAAGTACTTCTTCTTCACAGACCAGCCAACTTCAAGGAAGTACTTCTTCGATAAATGCACCACGCAGTGCAAGTGGGATAAATAGCATTGACGAACCTCAAGCAAGTACTTCTTCTTCACAGTGTGAAGAGGAATTGACACCGACCAAGCATTTGTACGAAATTTCTCCTATTCCAAAAATGCCAATACCCTTTAATAAAAGGAGAAAACAGATGGCAACGATATTAACGGATCCGGAAAATATGGTAAAAGTACGAGAAAAAGGAAAGCAAAAGTCTGAAGGAGAGGTGAATCGAAAGCAAAAGAAACAAACAAAGCATACAGCAACATCACATCAGGAAGAAGAAAAATGTGTTCCTGGAAGTTCCGGCACACCTAAATCAAAAAGGGCTAGGAAGCAAAGGACAGTCGAAGAAAGAGAATGGAGTGAAAGTGACGATGAGCCTCTTACCAAATATTCAGCTAATAACTGCCTTTGTTTAGAGTGCTTTGAACCATATGCAAAAACTACAAAGACCGATGATTGGATCCGGTGCATAAGATGTCTTCGATGGCTTCATGAAACATGCACCATGTATGGTGACATATGTAATATATGTTCTAGGAAAGATCTCCGAAAGAAAAACGCTGATGGTTAA
- Protein Sequence
- MPRKYLRKVNASLRASWTEEQLQTAVEKVQAGEISMREAHRRYNVPPRTLKRRMNTGSYEKRGLGPQGILGKENEKRLVSHIQRLVAAGFVPDRKAVRSLAYKFAQKLNIDHHFSAEKEMAGNAWLKSFLERNPELAIRQAEGLSLSRAQGMNKEDVKGFFDILEKVMSENDLLEKPSHIFNMDETGVQLINKPGKVITTKGVKAVRVLTSKERGENVTVIGCCSADGKCLPPVLIFKGVNRKPEFSDGLTGGFKVYMNKKSSFINSELFLKWLKEVFIPHKPSGKCLLILDGHTSHSTDIDMLEIADNNDIIILCLPSHCTQALQPLDRSFFGPFKTYFFQEAQLWMKNHSNRNFTRYRAGEVIGRAWLRAASAANAVNGFRATGIYPLNPNAIPDHFFSLQNTVENPSGPHDINTSQLQGTSSTSSINAPRSASGINSINESQASTSSSQTSQLQGSTSSINAPRSASGINSIDEPQASTSSSQCEEELTPTKHLYEISPIPKMPIPFNKRRKQMATILTDPENMVKVREKGKQKSEGEVNRKQKKQTKHTATSHQEEEKCVPGSSGTPKSKRARKQRTVEEREWSESDDEPLTKYSANNCLCLECFEPYAKTTKTDDWIRCIRCLRWLHETCTMYGDICNICSRKDLRKKNADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056476;
- 90% Identity
- iTF_00056476;
- 80% Identity
- -