Avir004017.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000163:1305127-1308848[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-11 4.2e-09 35.9 0.1 1 39 18 57 18 62 0.87
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATATCTGCGAAAAGTAAATGCTTCTTTACGAGCTAGTTGGACGGAAGAACAGTTACAAACAGCTGTGGAAAAGGTACAAGCGGGAGAAATAAGCATGCGTGAAGCACATAGGCGCTATAACGTTCCTCCGAGAACTTTACAACGTAGAATGAATACGGAAAGTTATGAAAAAAGAGGTATTGGTCCACAAGGAATTTTGGGAAAGGAAAATGAAAAAAGATTGGTTTCCCATATTCAAAGATTGGTTGCTGCTGGTTTTGCTCCAGATAGAAAAGCCGTCAGATCACTTGCATACAAATTTGCGCAGAAATTAAACATCGACCACCATTTCTCAGCGGAGAAAGAAATGGCGGGAAATGCATGGCTAAAATCGTTTTTAGAAAGAAATCCCGAATTAGCCATAAGACAAGCTGAGGGCCTTTCTCTCTTTAGAGCTCAGGGTATGAACAAAGAAGATGTGAAAGGATTTTTTGACATTTTGGAAAAGGTAATGTCGGAAAATGATTTGCTAGAGAAACCATCTCATATTTTCAATATGGATGAAACAGGCGTACGGCTGATCAATAAGCCTGGAAAAGTCATAACTACGAAGGTTGTCAAAGCAGTGCATGTACTCACCTCAAAAGAAAGAGGAGAAAATGTGACGGTAATAGGTTGTTGCAGTGCCGATGGTAAATGCTTACCACCGGTACTAATTTTTAAGGGCGTCAATAGGAACCGGAATTTTCAGACGGATTACCAGGGTGTCCAAAGTTTACATGAACAAGAAATCTTGTTAGGGCTCGTATTTCTGAAGTGGCTGAAGGAGGTATTTATTCCCCATAAACCATCAGGCAAATGTTTGCTAATTTTGGATGGACATACATCGCATAGTACGGATATCGATATCCTTGAAATCGCAGACAATAATGATATCATCATTTTGTGCCTACCAAGCCACTGCACTCAAGCCCTTCAGCCATTAGATAGAAGCTTTTTCGGCCCTTTTAAGACTTATTTCTTCCAGGAGGCCCAACTGTGGATGAAAAATCATTCCAACCGTAATTTCACTAGGTACCAAGCTGGTGAAGTAATAGGAAGAGCACGGTTAAGGGCAGCTTCTGCGGCCAATGCAGTAAACGGCTTTCGAGCAACAGGAATCTACCCACTTAACCCTAATGCGATCCCAGATCACTTCTTTTCTTTACAAAATACTGTGGAAAATCCATCTGGACCACACGATATAAACACCAGCCAACTTCAAGGAAGTACTTCTTCAATAATGCACCACGCAGTGCAAGTGGGGATAAATAGCATTGACGAACCTCAAGCAAGTACTTCTTCCTCACAGACCAGCCAACTTCAAGGAAGTACTTCTTCAATAAATGCACCACGCAGTGCAAGTGGGATAAATAGCATTGACGAACCTCAAGCAAGTACTTCTTCTTCACAGTGTGAAGAGGAATTGACACCGACCAAGCATTTGTACGAAATTTCTCCTATTTCAAAAATGCCAATACCCTTTAATAAAAGGAGAAAACAGATGGCAACGATATTAACGGATCCGGAAAATATAGTAAAAGTACGAGAAAAAGGAAAGCAAAAGTCTGAAGGAGAGCTGAATCGAAAGCAAAAGAAACAAACAAAGCATACAGCAACATCACATCAGGAAGAAGAAAAATGTGTTCCTGGAAGTTCCGGCACACCTAAATCAAAAAGGGCTAGGAAGCAAAGGACAGTCGAAGAAAGAGAATGGAGTGAAAGTGACGATGAGCCTCTTACCAAATATTCAGCTATTAACTGCCTTTGTTTAGAGTGCTTTGAACCATATGCAAAAACTACAAAGACCGATCATTGGATCCGGTGCATAAGATGTCTTCGATGGCTTCATGAAACATGCACCATGTATGGTGACATATGTAATATATGTTCTAGGAAAGATCTCCGAAAGAAAAACGCTGATGGTTAA
- Protein Sequence
- MPRKYLRKVNASLRASWTEEQLQTAVEKVQAGEISMREAHRRYNVPPRTLQRRMNTESYEKRGIGPQGILGKENEKRLVSHIQRLVAAGFAPDRKAVRSLAYKFAQKLNIDHHFSAEKEMAGNAWLKSFLERNPELAIRQAEGLSLFRAQGMNKEDVKGFFDILEKVMSENDLLEKPSHIFNMDETGVRLINKPGKVITTKVVKAVHVLTSKERGENVTVIGCCSADGKCLPPVLIFKGVNRNRNFQTDYQGVQSLHEQEILLGLVFLKWLKEVFIPHKPSGKCLLILDGHTSHSTDIDILEIADNNDIIILCLPSHCTQALQPLDRSFFGPFKTYFFQEAQLWMKNHSNRNFTRYQAGEVIGRARLRAASAANAVNGFRATGIYPLNPNAIPDHFFSLQNTVENPSGPHDINTSQLQGSTSSIMHHAVQVGINSIDEPQASTSSSQTSQLQGSTSSINAPRSASGINSIDEPQASTSSSQCEEELTPTKHLYEISPISKMPIPFNKRRKQMATILTDPENIVKVREKGKQKSEGELNRKQKKQTKHTATSHQEEEKCVPGSSGTPKSKRARKQRTVEEREWSESDDEPLTKYSAINCLCLECFEPYAKTTKTDHWIRCIRCLRWLHETCTMYGDICNICSRKDLRKKNADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056479;
- 90% Identity
- iTF_00056479;
- 80% Identity
- -