Aaes030507.1
Basic Information
- Insect
- Alsophila aescularia
- Gene Symbol
- -
- Assembly
- GCA_946251895.1
- Location
- CAMIUG010001713.1:157454-159721[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.26 3.1e+03 -0.7 0.1 36 51 2 17 1 21 0.82 2 18 0.00016 2 9.6 0.3 21 51 31 60 12 63 0.83 3 18 1.5e-05 0.18 12.9 0.1 21 51 74 103 70 106 0.87 4 18 0.0035 42 5.3 0.1 21 51 117 146 113 149 0.84 5 18 0.00038 4.5 8.4 0.1 21 51 160 189 155 192 0.87 6 18 0.00039 4.7 8.4 0.1 21 51 203 232 199 235 0.87 7 18 0.00034 4.1 8.6 0.1 21 51 246 275 242 278 0.87 8 18 0.0022 26 6.0 0.1 23 51 290 317 286 320 0.85 9 18 0.00039 4.7 8.4 0.1 21 51 331 360 327 363 0.87 10 18 0.00021 2.5 9.3 0.1 21 51 374 403 370 406 0.87 11 18 0.00039 4.7 8.4 0.1 21 51 417 446 413 449 0.87 12 18 0.0023 27 5.9 0.1 23 51 461 488 458 491 0.85 13 18 0.007 83 4.4 0.1 21 51 502 531 498 534 0.85 14 18 0.0002 2.3 9.3 0.1 21 51 545 574 538 577 0.87 15 18 0.0012 14 6.9 0.1 21 51 588 617 584 620 0.86 16 18 0.00034 4.1 8.6 0.1 21 51 631 660 627 663 0.87 17 18 0.00039 4.7 8.4 0.1 21 51 674 703 670 706 0.87 18 18 0.00039 4.7 8.4 0.1 21 51 717 746 713 749 0.87
Sequence Information
- Coding Sequence
- ATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACACAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCATACAACGATGCAACAGGCGAGTCTGCGGCTGCACCTGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACACAACTATGCAACAGGCGAGTCTGCTGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACACAACGATGCAACAGGCGAGTCTGCGGCTGCACCCGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAATGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTTAACCTTTGTAAGAAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACACAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAATACACTTTAACCTTTGTAAGAAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACATACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGTGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGGAGGAGCAGAAGGTAGAGTGCGACGTGTGCCACACAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCTGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAATGTGGAGTGCGACGTGTGCCACACAACAATGCAACAGGCGAGTCTGCGGCTGCACCAGAAGATCAAACATACCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAATGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACTCTTATAA
- Protein Sequence
- MQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHTTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHTTMQQASLRLHLEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHTTMQQASLLLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHTTMQQASLRLHPEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQNVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHFNLCKKQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHTTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVIHFNLCKKQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTYLQFQRKEQKVECDVCHKTMQQASLRLHQVIKHAGKGPVCEVTHLQFQREEQKVECDVCHTTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQNVECDVCHTTMQQASLRLHQKIKHTGKGPVCEVTHLQFQRKEQNVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055629;
- 90% Identity
- iTF_00055629;
- 80% Identity
- iTF_00055629;