Basic Information

Gene Symbol
-
Assembly
GCA_963675035.1
Location
OY776112.1:134538384-134566344[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.06 9e+02 2.8 0.0 19 43 65 89 56 92 0.85
2 13 0.073 1.1e+03 2.5 0.0 20 43 85 108 81 113 0.85
3 13 0.068 1e+03 2.6 0.0 20 43 104 127 99 132 0.85
4 13 0.068 1e+03 2.6 0.0 20 43 123 146 117 150 0.85
5 13 0.075 1.1e+03 2.4 0.0 20 43 142 165 138 169 0.85
6 13 0.073 1.1e+03 2.5 0.0 20 43 161 184 156 187 0.85
7 13 0.06 9e+02 2.8 0.0 20 43 180 203 169 207 0.82
8 13 0.059 8.8e+02 2.8 0.0 20 43 199 222 188 227 0.82
9 13 0.075 1.1e+03 2.4 0.0 20 43 218 241 214 245 0.85
10 13 0.073 1.1e+03 2.5 0.0 20 43 237 260 232 263 0.85
11 13 0.07 1e+03 2.5 0.0 20 43 256 279 251 283 0.85
12 13 0.064 9.6e+02 2.7 0.0 20 43 275 298 270 301 0.85
13 13 0.048 7.2e+02 3.1 0.0 19 43 293 317 283 321 0.82

Sequence Information

Coding Sequence
ATGGTTTGGACATTCGGCAAGACGACTTTGCGGTGGTGTCAGGCGGCGCGGTGCGCTGGTGACACTCGGCAAGACGACTTTGCGGTCGCAAGTCAGATGGTGGTGTCAGGCGGCGGCCGGGGCGGCGCGGTGCGCTGGTGCCACTCAGAATCCGTCCTTCAGGTGCCTAGCTGGGCTGACATTCGTCTATCTGACAATAGTGAAAATCACCATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAACAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAACAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAACAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAACAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGGTATCTGACAACAGTGAAAATCACGATCAGGTGCCTACCAGCTGGGCTATCATTCGGCTATCTGACAATAGTGAAAATCACGATCAGGTGACGCAAGACTCGGGCACGTTGGCGCGTAGGAGCGCTACTTGCGATGCGTGCGCACGTCCGAGGATGAATGGCGGATGGTGTGTGACATCGCGTCATACGACTGGAACTAATTGCCGTAGGGGTACTACTGGCACTACTGGTAGTCAGGATCAGGACCGGCGAGAGGAGCTAGTATTCTCGCTGGCCCTGGCCAACTGGGGACGATTGGAAACCGAACCAACAATCTGGGAGACTGGTCTGAGCGGTCAGAGGTGGAATTACAACCATTCCATGGTTACAACCCGAGAGCTAACTCAGAGGCGTGTTAGTTGCATCACACAACCTCCTGAGTCACAAGAGATCACAAGGTGGAAAGTTCATTCCTCCCTCCGCCTTACTCTCAACACACCTTCCGCATCGGTGGATGACCAAGCCGGTAGCCTTGGCCTACGTTGTCAGCCGACGCAGTTGACACACCTAGAGTATGATTCACACGCCGCCGGCGACACAGTAATGCTGGGGGTCTCCCTCTCCCGCGTCTACTGTCTATATAGTGTCTGGTGGCGCAACTGGGCGTTCCTGTAG
Protein Sequence
MVWTFGKTTLRWCQAARCAGDTRQDDFAVASQMVVSGGGRGGAVRWCHSESVLQVPSWADIRLSDNSENHHQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRLSDNSENHDQVPTSWAIIRVSDNSENHDQVPTSWAIIRLSDNSENHDQVTQDSGTLARRSATCDACARPRMNGGWCVTSRHTTGTNCRRGTTGTTGSQDQDRREELVFSLALANWGRLETEPTIWETGLSGQRWNYNHSMVTTRELTQRRVSCITQPPESQEITRWKVHSSLRLTLNTPSASVDDQAGSLGLRCQPTQLTHLEYDSHAAGDTVMLGVSLSRVYCLYSVWWRNWAFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-