Amod028726.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:395487243-395488940[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.016 2.5e+02 4.6 0.0 9 44 45 80 42 88 0.87 2 6 0.016 2.5e+02 4.6 0.0 9 44 109 144 106 152 0.87 3 6 0.016 2.5e+02 4.6 0.0 9 44 173 208 170 216 0.87 4 6 0.016 2.5e+02 4.6 0.0 9 44 250 285 247 293 0.87 5 6 0.016 2.5e+02 4.6 0.0 9 44 314 349 311 357 0.87 6 6 0.016 2.5e+02 4.6 0.0 9 44 391 426 388 434 0.87
Sequence Information
- Coding Sequence
- ATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTCGTCAATTTAATGTATTTCCAGCAACGGAGAAGATGTGTGCGGTGTCAATATTACTTACCCCGGAGCTCTACAGGCACCTCGTCTTTGTCAATTTAA
- Protein Sequence
- MCAVSILLTPELYRHLVFVNLMYFQQRRRCVRNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRCQYYLPRSSTGTSNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRCQYYLPRSSTGTSNGEDVCGVNITYPGALQAPRLRQFNVFPATEKMCAVSILLTPELYRHLVFVNLMYFQQRRRCVRCQYYLPRSSTGTSSLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -