Amod095908.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776116.1:2242308-2251911[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.92 1.4e+04 -1.0 0.1 26 48 112 134 100 137 0.80 2 9 0.032 4.7e+02 3.6 0.0 21 43 220 242 203 253 0.84 3 9 0.13 2e+03 1.6 0.0 26 48 281 303 276 307 0.82 4 9 0.0045 68 6.3 0.4 21 48 304 331 294 334 0.88 5 9 0.085 1.3e+03 2.3 0.1 22 45 334 357 330 366 0.84 6 9 2 2.9e+04 -2.1 0.0 27 44 395 412 393 416 0.87 7 9 0.024 3.6e+02 4.0 0.0 21 44 417 440 413 445 0.90 8 9 0.00017 2.6 10.9 0.1 21 44 445 468 441 474 0.91 9 9 7.5e-08 0.0011 21.7 0.8 21 48 530 557 512 562 0.92
Sequence Information
- Coding Sequence
- ATGAACAATGCAGAATTAATAAAATGGCGCATCGACTTATCCAGAGAACGAACAAGGACAACAGCCAATAGGAAGGTGTCAAGTTTGGTGGGAGAGAGTGATGTGGATGATGCTGAAGAGCAGTGTTTGGATCAGGTCAAAGAAGAAATTGACCCACAGGTTCCTACAGGTTCAGGCAAGCAGGAAGGAATAGAGGCTGGAAACCTAACTCCAAGCAATGACGAACTCAGCATCCAGGTGGGGGACGTGCAGTGTTTCTCACTTTACCTTCCTCAGGAAAAAATCTGTGATGCCACCAAAGATGGTAGTGCGATAGCAAATTCAGAGGCCTTCGTATGTGATATTTGTCGTGCGTCCTACCATTCAAAAACCACATTGTCAATCCACATTCAGAGACAACATTCGTCGGAGAGGAATTACAAATGTTCCGAGTGTGACAAAACGTTTCTGAGCAGGGCCGGGCTGAGGATTCACCAGGACGTGCACTCAGCTGACCAACGGACGTACTGCGACGACTGTGGGAAGACGTTCGGTTGTGTGACCAGTCTACGGGTGCATCAGCGCCTGCACTCTGGCCAGAGACCGTTCGCGTGCACTGCCTGCGACAAACGCTTCATCGACGGAAGTGGTTTGTTAAAACACCAGAGAGTTCATACAAACGACAAACCTTTTAAATGTTCATTATGTCCACGCTCTTTCAAACAGACCGGTTCACTGAGGAAACACGAAAGCAGTCATCTCGGAACTAGGCCGTTTCAGTGTGCGTCTTGCAACAAACGGTTCTGCGATAAAGGTAGTCTTAAACGTCACCAAGTCGTGCATACCGGGATCAAAGCTTTTACTTGCGATATTTGCGGTAAAGCAGTCAGCGATCGTAACACACTTAAAATCCACCTGAGAATTCACAGCGGTGAAAAACCTTATTCCTGTAATCTTTGTAAACAGAGTTACTACGATTCCACCACCTTGCGGAAGCACATCAAACGTTATCATCTTCGGGAGCAATCTTTTCAATGCGATTTGTGCGAAAAGACCTTtacttttaagaaaaatttgCGGCTTCATATATCAAGTCATTTGCGGATCAAACCGTACGCATGTGACTTTTGTAATCGGTCCTTTGTCAGCAATCATTACCTCCAAAAGCACATTAATATACATAACGGAAATTTTGAATTCGTCTGCGAAGTTTGTAACAAAGTTTGTACTTCTCTGACCAATTTACAGTTCCACGTCAAATGCCATACTGACGAGAGACCGTTTTCTTGCGAAGTGTGCAAAAAGTTCTTTCGCGACGCCGGCTCCTTGAAGAAGCACTTCCTGACACACACCGGCGAACGTCCCTATGTCTGTCGAATCTGTAACGAGTCGTGGAGAAAAAGCGAAGGTTTGAAAAGGCATTTGATGAAACACAGTGGTGAAAACCCGAAGAAGGTCAGTTGTCTCGTGTGTCACAAGCGGTACTCCTCAGCCGGGCTCAAGGCTCATTCCGTTATCCACTCGGACGTCAAGGCCTTTGCTTGCGCTCATTGTCCGAAAACTTTTCATACGAAGACGAATTGCGCAACTCACGAACGAATCCATACCGGCGAAAAACCTTTCACCTGTCCAATCTGTTACAAACGGTTCACACAGGGCTGCAACATGAAGAAACACTGCCTGATCCGACATGAGCAACAGACCCAGCCAAACACCAAGACCGAATAA
- Protein Sequence
- MNNAELIKWRIDLSRERTRTTANRKVSSLVGESDVDDAEEQCLDQVKEEIDPQVPTGSGKQEGIEAGNLTPSNDELSIQVGDVQCFSLYLPQEKICDATKDGSAIANSEAFVCDICRASYHSKTTLSIHIQRQHSSERNYKCSECDKTFLSRAGLRIHQDVHSADQRTYCDDCGKTFGCVTSLRVHQRLHSGQRPFACTACDKRFIDGSGLLKHQRVHTNDKPFKCSLCPRSFKQTGSLRKHESSHLGTRPFQCASCNKRFCDKGSLKRHQVVHTGIKAFTCDICGKAVSDRNTLKIHLRIHSGEKPYSCNLCKQSYYDSTTLRKHIKRYHLREQSFQCDLCEKTFTFKKNLRLHISSHLRIKPYACDFCNRSFVSNHYLQKHINIHNGNFEFVCEVCNKVCTSLTNLQFHVKCHTDERPFSCEVCKKFFRDAGSLKKHFLTHTGERPYVCRICNESWRKSEGLKRHLMKHSGENPKKVSCLVCHKRYSSAGLKAHSVIHSDVKAFACAHCPKTFHTKTNCATHERIHTGEKPFTCPICYKRFTQGCNMKKHCLIRHEQQTQPNTKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00052127;
- 90% Identity
- iTF_00052127;
- 80% Identity
- iTF_00052127;