Amod110173.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776117.1:96142348-96151134[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 2.4e+02 4.6 0.0 14 32 22 40 21 44 0.90 2 13 0.56 6.1e+02 3.3 0.1 14 31 52 69 37 74 0.60 3 13 7.6 8.3e+03 -0.4 0.0 15 31 68 84 67 90 0.84 4 13 4.5 4.9e+03 0.4 0.0 19 32 87 100 81 103 0.79 5 13 0.61 6.7e+02 3.1 0.0 14 32 97 115 96 120 0.87 6 13 1.4 1.5e+03 2.0 0.0 15 32 113 130 112 133 0.83 7 13 1.2 1.3e+03 2.2 0.0 14 32 127 145 126 148 0.84 8 13 2.1 2.3e+03 1.4 0.0 15 32 143 160 141 168 0.84 9 13 1.4 1.5e+03 2.0 0.0 14 32 157 175 155 180 0.88 10 13 3.4 3.7e+03 0.8 0.0 15 32 173 190 172 197 0.82 11 13 4.2 4.6e+03 0.5 0.0 14 32 217 235 216 239 0.87 12 13 1.1 1.2e+03 2.4 0.0 14 32 232 250 228 255 0.84 13 13 0.65 7.1e+02 3.1 0.0 14 32 247 265 246 270 0.88
Sequence Information
- Coding Sequence
- ATGAATGCTCATCGGCCACTTCTAGCCACAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGTAGAGGAGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGAGAGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGCCATAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAACCACAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGAGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGCCACAGAGGGGGGTTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGAGGATTCCACTATCAATGCTCATCGGCCAGTTCTAGCCACAGAGAGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGGGGATTCCACTATCAAAGCTCATTGGCCAGTTATAGCCACAGAGGGGGATTCCACTATCAAATCTCATCGGCCAGTTCTAGTCGCAGAGGAGGATTCCACTATCAAAGCTCATTGGCCAGTTCTAGTCGCAGAGGGGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGAGGATTCCACTATCAAAGCTCATCGGCCAGTTCTAGTCGCAGAGGGGTATTCCACTATCCTTTTCCACTTTCTAGCTGATGCTGCTTGGGTTCCGGAGCCCACTCCTGGTCCATCATCTGCCCCAGACATTGTGCCTGTCCCTGACCCCAAACTCACTGAAGACCCAATAGTTTTACGAGGAAGGACGCCGTCAGGCGTTACGAGAAACTCTACTGTCTTGTGCGCCATGGGCGAGCCCCTCCGGACTGCGTGGCTGGACCCAGCGGACCCCAACCCGCGTCGCCCGCACCCTCTTCAACATCCTCGTCAACGCGAAGCAGAACCAATGACGAAGAACCACCGGTGCTGGCTGACTAGCTGGCACAAGAGGGGTTCGGAGTCTTAG
- Protein Sequence
- MNAHRPLLATEGDSTIKAHRPVLVVEEDSTIKAHRPVLVAEGDSTIKAHRPVLVAERDSTIKAHRPVLAIEGDSTIKAHRPVLTTEGDSTIKAHRPVLVAEEDSTIKAHRPVLVAEGDSTIKAHRPVLVAEGDSTIKAHRPVLATEGGSTIKAHRPVLVAEEDSTINAHRPVLATERDSTIKAHRPVLVAEGDSTIKAHWPVIATEGDSTIKSHRPVLVAEEDSTIKAHWPVLVAEGDSTIKAHRPVLVAEEDSTIKAHRPVLVAEGYSTILFHFLADAAWVPEPTPGPSSAPDIVPVPDPKLTEDPIVLRGRTPSGVTRNSTVLCAMGEPLRTAWLDPADPNPRRPHPLQHPRQREAEPMTKNHRCWLTSWHKRGSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -