Amod090350.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963675035.1
- Location
- OY776115.1:63202461-63213307[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-41 1.5e-36 128.9 12.0 137 300 9 165 4 165 0.88 2 2 0.06 3.6e+03 -0.3 6.9 133 166 197 230 166 239 0.53
Sequence Information
- Coding Sequence
- ATGACCTCGAAAGGAGCGCTGGCCGCAGACAGAGAACACAAGGATACGTGCAGACAGTTGGACCAGACCAAGCGACACAGGGTCAAGCTGCAGGAGGACTTGGACGTGTCTCGAGCACAACTGGAGGAGCTGCTGCAACTGATACAGGAGAAGGGTCTGGTGGTGGTGGAGGgggaggaggaagaggaggagggggaggagggggaaCCGAGGACCAAACCCCCGAGGAAGGCTCTGGTCTCGGCGGAGGTGGCCGATGTGTTGCAGCATGGGAGCGGCTCACTAGACGTGCGGTTGAAGCGGTTCGTGGAGGAGCGTAATGAGTTGTTGGACGAGCTACGGCGAGTGAAACTGGAGTTGGAGGAGGAGAGAGCATCACGCGGCCGTCACACCAATGGCCCCACCGACGATCAGGATGACATTCAACGTGAAGCCAACAAGCTTCTCGGGGATTACAAGTTTAAGCTACAGAAGGCCGAGCAAGATGTCAACACACTACAGGCTAATGTTGCAAGATTAGAAAGTCAAGTAGTTCGGTATAAGTCTATCGCAGAAACCTCAGAAAAATTGGAAGATgaattaaaattagaaaaaagGAAACTGCAAAGAGAGTTGCGGGAGGCACAGGCGCGGGTGGAGGAGCTGGAGACGTCCCACTCCCACCTGCAGAGGCGACTGGACAAGCTCAAGAACGCCAAGTCCGCACTGCTCAAAGACTTGTAG
- Protein Sequence
- MTSKGALAADREHKDTCRQLDQTKRHRVKLQEDLDVSRAQLEELLQLIQEKGLVVVEGEEEEEEGEEGEPRTKPPRKALVSAEVADVLQHGSGSLDVRLKRFVEERNELLDELRRVKLELEEERASRGRHTNGPTDDQDDIQREANKLLGDYKFKLQKAEQDVNTLQANVARLESQVVRYKSIAETSEKLEDELKLEKRKLQRELREAQARVEELETSHSHLQRRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -