Amod090353.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963675035.1
- Location
- OY776115.1:63215546-63232982[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.33 1.9e+04 -2.8 0.2 45 88 130 172 110 179 0.59 2 2 7.7e-52 4.6e-47 163.5 9.0 1 137 282 419 282 423 0.86
Sequence Information
- Coding Sequence
- ATGTGTGATAACATTGATAAGACATTGATGGAGGGGGTCGGGATTGTCAGTGTTGGTGAGCCCACGATGGGCAACAAGCATGGGGCTTCTGGAAAGAagaataagaacaataattatgTAAACGGGGACAGTGATTTGGATGATAGCTTTGAAAGCGATCCGAAGTACGTTTCAATCGTGGATGTGAGTTTCACCTCTCCTCAGTACTTTAGTGCTCGGGAGGAATCCCTTCATCAGAGCATCGAGGTGAACTCGCCAGTGAAAATCAATGGAGACGTTTCTTCTGTGAACGTGGGCAGTGAAATTAAGATAAACGGCGAGGATTCCGATGTGAAAGCCAATGGTGATGTGTCACTGGATCAAAATGAAGAGACTGTGAATCGAAGTGTGGTAGTTGTCGAGCCGACTGAAAACGGACATTCAGTGAGTAGAGTTTCAGTGAATGGAGGGTTGGACACGTGTGATACATCCCGGGATAGTAATGTGTTTGACTTTTCCACCTCATTTGTTGATTTGGTGCAGCAAGAGTCCAACTCTTTTGCATTGAGTCCTATTATGAACGCTTCCTCTGGTAATCCGAAAGGTTCATCCACTCCATTCCCCAAACAGTTACCGTCAGAAACCTCCCCCGAAAATGACATTTTGAACGAGTCGTTTATTGTTAACGGCTCACCCTCATTCACAGAGGAGTCGTTAAATTGTTCATCCATGACCGGAGATGAAGTAGAAACGTTTGTTCGTGAAAAGCTGAAGCGGCAGAGGAGCGGCAGCAGCGACTATTGGAACCAGGAGGACATAGAAGATCACTGCATTGTCGACTTCCTCGGGAAAAGCACTGATGACGCGGAGGCGCGGCTGGCTGCCAAGCGACAGGCCCGAGCTGAGGCTAGGGAGATCAGGATGAGGGAGTTGGAGAGGCTGCAGCGGGAGAGCGAGGACAACGACAGAGTCTGCGACGTGTTCTCTACGCCAGATGGGGTCGGGGTGCGGCTCCCGAGGGCAGGCTCCATCACCACTCCTCGGTCGCTCCTCTCGTCCAACAACAGCTACCACTCGTCGCGCCGTAGCTCGGAGGACTCTCTGGAGGAGGTCAACAGCATGCGAGATGTCAAGATGGAGTTGAAGGAGTGGGAAGACAAGTTCCGCAAGGCGATGGTGGCCAACGCTCAGCTGGATAACGAGAAGGCAGCGTTGGCCTTCCAGGTGGACTTGTTCAAGGACAAGTACGAGGAGTTGGAAGAGCAACATCACCAGTTGACGGTGCGTTGGTGCTGTAGACTCCCTCTTAACCGTTGA
- Protein Sequence
- MCDNIDKTLMEGVGIVSVGEPTMGNKHGASGKKNKNNNYVNGDSDLDDSFESDPKYVSIVDVSFTSPQYFSAREESLHQSIEVNSPVKINGDVSSVNVGSEIKINGEDSDVKANGDVSLDQNEETVNRSVVVVEPTENGHSVSRVSVNGGLDTCDTSRDSNVFDFSTSFVDLVQQESNSFALSPIMNASSGNPKGSSTPFPKQLPSETSPENDILNESFIVNGSPSFTEESLNCSSMTGDEVETFVREKLKRQRSGSSDYWNQEDIEDHCIVDFLGKSTDDAEARLAAKRQARAEAREIRMRELERLQRESEDNDRVCDVFSTPDGVGVRLPRAGSITTPRSLLSSNNSYHSSRRSSEDSLEEVNSMRDVKMELKEWEDKFRKAMVANAQLDNEKAALAFQVDLFKDKYEELEEQHHQLTVRWCCRLPLNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -