Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.026 6.2e+02 2.8 0.0 28 42 23 37 19 42 0.87

2 9 0.025 6e+02 2.8 0.0 28 42 49 63 44 68 0.87

3 9 0.025 6e+02 2.8 0.0 28 42 75 89 70 94 0.87

4 9 0.026 6.1e+02 2.8 0.0 28 42 101 115 96 119 0.87

5 9 0.018 4.2e+02 3.3 0.0 28 43 130 145 125 154 0.86

6 9 0.025 6.1e+02 2.8 0.0 28 42 156 170 151 176 0.87

7 9 0.02 4.7e+02 3.2 0.0 28 43 185 200 179 209 0.87

8 9 0.016 3.9e+02 3.4 0.0 28 43 211 226 205 236 0.84

9 9 0.018 4.4e+02 3.3 0.0 28 43 237 252 232 266 0.85

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.026	6.2e+02	2.8	28	42	23	37	19	42	0.87
2	9	0.025	6e+02	2.8	28	42	49	63	44	68	0.87
3	9	0.025	6e+02	2.8	28	42	75	89	70	94	0.87
4	9	0.026	6.1e+02	2.8	28	42	101	115	96	119	0.87
5	9	0.018	4.2e+02	3.3	28	43	130	145	125	154	0.86
6	9	0.025	6.1e+02	2.8	28	42	156	170	151	176	0.87
7	9	0.02	4.7e+02	3.2	28	43	185	200	179	209	0.87
8	9	0.016	3.9e+02	3.4	28	43	211	226	205	236	0.84
9	9	0.018	4.4e+02	3.3	28	43	237	252	232	266	0.85

Coding Sequence: atgATCGTGACTATCGATCGTTCTGAAAATGAAAACGAGAACCCCCCGTCACGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGAATAGAACCCCCGTCATGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGAATAGAACCCCCGTCATGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGAATAGAACCCCCGTCATGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGAATAGAACCCCCCAACCCACCGTCACGGACTTCCAACCACTATGGAAAGAGCATTGACCTGTCTAAACGCTGGCTGTCTCCTGCTAGATTAGAACCCCCGTCATGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGATATCTCCTGCTAGAATAGAACCCACCAACCCACCGTCACGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGATTAGAACCCCCGTCATGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCTAAACGCTGGCTGTCTCCTGCTAGATTAGAACCCCCATCACGGACTGCCAACCACTATGGAAAGAGCATTGACCTGTCCAAACGCTGGCTGTCTCCTGCTAGAATAGAACCCACCGTCACGGACTGCCAACCACTATGGAAAGAGCATTGA
Protein Sequence: MIVTIDRSENENENPPSRTANHYGKSIDLSKRWLSPARIEPPSWTANHYGKSIDLSKRWLSPARIEPPSWTANHYGKSIDLSKRWLSPARIEPPSWTANHYGKSIDLSKRWLSPARIEPPNPPSRTSNHYGKSIDLSKRWLSPARLEPPSWTANHYGKSIDLSKRWISPARIEPTNPPSRTANHYGKSIDLSKRWLSPARLEPPSWTANHYGKSIDLSKRWLSPARLEPPSRTANHYGKSIDLSKRWLSPARIEPTVTDCQPLWKEH

Sequence clustering based on sequence similarity using MMseqs2