Amod001779.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- Smarce1
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:13598484-13624053[+]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 9.4e-19 3.5e-15 58.8 0.8 1 60 44 103 44 106 0.97 2 8 0.039 1.5e+02 5.6 0.0 40 60 171 191 168 194 0.92 3 8 0.76 2.8e+03 1.4 0.0 40 58 237 255 236 258 0.92 4 8 0.76 2.8e+03 1.4 0.0 40 58 262 280 261 283 0.92 5 8 2.8 1e+04 -0.4 0.0 40 59 287 306 287 307 0.88 6 8 0.024 90 6.2 1.0 40 60 307 327 303 329 0.89 7 8 0.00012 0.44 13.7 2.0 40 68 357 385 355 386 0.93 8 8 6.8 2.5e+04 -1.6 1.1 44 64 511 531 499 534 0.82
Sequence Information
- Coding Sequence
- ATGTTTGATTTGAAAGAGTCGGCTAACCAGAACCCCTTCGCCACCAGTCCTCATGCGCCTCCAGGGTTCCATCCTCAGAAGGTTGGGAAGGCTCAGGGGGACTCGAGGACCCCCAAGCCGCCCAAGCCTCCCGAGAAGCCCCTGATGCCGTACATGAGGTACAGCCGGAAGGTGTGGGACCAGGTTAAGGCACAGAACCCAGAGCTGAAGCTGTGGGAGATTGGGAAGATCATCGGGCAGATGTGGCGCGATCTGCCGGAGGAGGACAAGACTGAGTATGTGGAGGACTACGAGGCCGAGAAGGTGAGGTGGGGGTCAGGGGTGGGAGTCAGGGGGCGAGGGGTGAGGGGCGAGATCTGCCAGAGGAGGACAAGACTGTATGTGGAGGACTACAAGGCCGAGAAGGCGAGACCTGCCAGAGGAGGACAAGACTGTGTATGTGGAGGACTACGAGGCCGAGAAGGTGAGGTGGGGGTCAGGGGTGGCAGTCAGGGGGTGAGGGGTCAGGGGCGAGACCTGCCAGAGGAGGACAAGACTGTGTATGTGGAGGACTACGAGGCCGAGAAGGTGAGGTGGGGGTCAGGGGGCAAGGGGTCAGGGGCGAGACCTGCCAGAGGAGGACAAGACTGTGTATGTGGAGGACTACGAGGCCGAGAAGGTGAGGTGGGAGTCAGGGGTGGGAGTCAGGGGGGGGCAAGGGGTGAGGGGCGAGACCTGCCAGAGGGGGACAAGACTGTGTATGTGGAGGACTACGAGGCTGAGAAGGGGGCAAGGGGTGAGGGGCGAGACCTGCCAGAGGGGGACAAGACTGTGTATGTGGAGGACTACGAGGCTGAAAAGGGGGCAAGGGGTGAGGGGCGAGACCTGCCAGAGGTGGACAAGACTGTGTATGTGGAGGACTACGAGGCCAAGAAGGGGCGAGACCTGCCGGAGGAGGATAAAACTGAGTATGTGGAGGACTACGAGGCCGAGAAGGTGAGGGGTCGAGGGGTGAGGGGTGAGACCTGCCCGAGGAGGACAAGACTGAAAGGTGTGGCGGGGCGAGGGGTGGGAGTGAGAGGTGAGGGGCGAGACCTGCCGGAGGAGGACAAGACTGAGTATGTGGAGGACTACGAGGCCGAGAAGGTTGAGTACGAGAAACAGCTGAAGATTTACCACAACTCGCCGGCCTATCTCGCCTATGTCGCAGCCAAGTCCCGGGGGAAAGCCAACCAAGAAAAAGAGGACAAAGAAGAAGGAGGAAGGTCGGGGGAGAGAGGGGGCAAACAGGCGGACAGACGTATTGACATTCAACCGGCAGAGGATGAAGATGACGCTCAAGACGACGGCTACTCCGTGAAGCACGTTGCGTACGCGCGATACCTCCGCAACCATCGGCTCATCAACGAGATATTCTCGGACGCCATCGTGCCGGACGTGCGCTCCGTGGTGACGACCGCGCGGATGCAAGTGCTCAAGCGGCAGGTGCAGAGCCTGACAATGCATCAGAAGAAACTTGAAGCTGAACTCCAACAAATTGAAGAAAAGTTTGAAGCTAAGAAACGAAAGTTCATAGAGAGCAGTGAGACGTTTCAAGAAGAGCTGAAGAAGCACTGCCAGCGCGCGGTGGACGAGGACACATTCCAGAAGATGGTGGAGCGGCAGGTGGAAGTGTTGCGGAAGGAGAGGGCGCGCGGCGGGGAGGAGGCGAGCAAGCCCCCGCGGGCGCCGGAGGAGAGTGGCGGGGCCCCGGAACCCGTAGCCACCCCCACCACCAACGGAACCGAGGAACCACCCAACACACAGCACTCTGAGCCTATGGAGGAAAGAAGTCAATCGGCGGATGAGTCCAGCAATCCAGCCATGGACATTCAGGCCCCGTCACCGGCGATGCCGTCTAAACCGGCGGAGACTGGCCCCGCTGCGACTCCTGCCCCCGCCCCCACCGTAGCAGCTGCCCCCGCTCCAGCTCCTGCCCCCTACATGCACCCCACCACCCCCTACCAGGCCCCAGGGTATCAAGGGGGCTTCCCGCCCCACGCCCCGCCCGCTGGGGCACCCCCACAGTCTCAGATGCCCCCGCCCCAGGGGTTTCAGCCTGCAATGGCGCCATATCCCCCTCAGCAGTACCCACCTTCCCCTGCCACCCAGCCTCTCCCCCCACGACCCCCGTACGGATACCCGCAGACCCCGTACCCCCAGTACCCTCCACACCCATACTACCATCAGAACCCCTACCCCCAGTACCCAGCCCCCCACATGGCCCCCGCCCGCCCCCACCCCCATCCGTACCACATGCCCCCGCAGCAAGACCCCCAGGCTCATCCTGGCGTGGAGAACAACATGTATGGCCCCCCGCCGCAACAGATGCCAGAGCGGGGGCCCCCGCCTGCAGACGAGCCCATGGAAGATACCAAGCCTGACATCGGGCCCCCCATCGACACCAGGATCATCAGTGTCTTCAGGCGACAACTCACGTATAATCTTCGTGAGTGTATTCATTTATATCAGATTGTGCATATAACATCACTCACTAGCAGACGAGACTAG
- Protein Sequence
- MFDLKESANQNPFATSPHAPPGFHPQKVGKAQGDSRTPKPPKPPEKPLMPYMRYSRKVWDQVKAQNPELKLWEIGKIIGQMWRDLPEEDKTEYVEDYEAEKVRWGSGVGVRGRGVRGEICQRRTRLYVEDYKAEKARPARGGQDCVCGGLRGREGEVGVRGGSQGVRGQGRDLPEEDKTVYVEDYEAEKVRWGSGGKGSGARPARGGQDCVCGGLRGREGEVGVRGGSQGGARGEGRDLPEGDKTVYVEDYEAEKGARGEGRDLPEGDKTVYVEDYEAEKGARGEGRDLPEVDKTVYVEDYEAKKGRDLPEEDKTEYVEDYEAEKVRGRGVRGETCPRRTRLKGVAGRGVGVRGEGRDLPEEDKTEYVEDYEAEKVEYEKQLKIYHNSPAYLAYVAAKSRGKANQEKEDKEEGGRSGERGGKQADRRIDIQPAEDEDDAQDDGYSVKHVAYARYLRNHRLINEIFSDAIVPDVRSVVTTARMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFIESSETFQEELKKHCQRAVDEDTFQKMVERQVEVLRKERARGGEEASKPPRAPEESGGAPEPVATPTTNGTEEPPNTQHSEPMEERSQSADESSNPAMDIQAPSPAMPSKPAETGPAATPAPAPTVAAAPAPAPAPYMHPTTPYQAPGYQGGFPPHAPPAGAPPQSQMPPPQGFQPAMAPYPPQQYPPSPATQPLPPRPPYGYPQTPYPQYPPHPYYHQNPYPQYPAPHMAPARPHPHPYHMPPQQDPQAHPGVENNMYGPPPQQMPERGPPPADEPMEDTKPDIGPPIDTRIISVFRRQLTYNLRECIHLYQIVHITSLTSRRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -