Amod112583.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- foxn3
- Assembly
- GCA_963675035.1
- Location
- OY776117.1:140211011-140241190[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.2 2e+04 -1.6 0.0 1 10 226 235 226 238 0.89 2 8 7.3 3.3e+04 -2.3 0.0 2 10 248 256 247 259 0.90 3 8 0.14 6.3e+02 3.2 0.0 1 13 268 280 268 288 0.87 4 8 3.9 1.8e+04 -1.5 0.0 1 10 289 298 289 302 0.88 5 8 3.9 1.8e+04 -1.5 0.0 1 10 310 319 310 323 0.88 6 8 0.14 6.5e+02 3.2 0.0 1 13 331 343 331 350 0.88 7 8 3.9 1.8e+04 -1.5 0.0 1 10 352 361 352 365 0.88 8 8 4e-36 1.8e-32 113.9 0.0 1 85 373 455 373 458 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGTTCTGTTCGCATTCCACCAGATCTTATCAAACCTAACGCTGAAAACATAACACAGACGTTTGATTTTCAAGAGATGCCTGGTTCTGTTTGCATTCCACCAGATCTTATCAAACCTAACGCTGAAAACATAACACAGGCGTTTGATTTTCAAGAGATGCCGGGTTCTGTTCGCATTCCACCAGATCTTATCAAACCTAACGCTGAAAACATAACACAGGCGTTTGATTTTCAAGAGATGCCTGGTTCTGTTCGCATTCCACCAGATCTTATCAAACCTAATGCTGAAAACATAACACAGGCGTTTGATTTTCAAGAGATGCCTGGTTCTGTTCGCATTCCACCTGATCTTATCAAACCTATAGACTTTTTTCAAGAGGGAGATGGAGCGTCTGAGATGCGTTCTGAGGATGATGATCTCACCTCCTTGACCTGGCTTCAAGACAAAAATCTGCTGAAAGGTATAAATCTGCGCACTGCCGGAGCAGGGGTTCAGGAGTCGCCGACGAGTGACTACGTAGACGACAGCACCAGCGAGCGAGACTCTTCCTGTTCTAGTGTCAACAGCAGCAGCCCCACCCCACCCCCCACCAGTGCTGCCACCCCCGCGCCAGCTGTCAAAAATAAGCACCCCCACCACATACCATACGACCCCCAGATTCACACGACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGAACTTCGCTCGTTGTTTCCAGATTCACACGACATTGAAGCCTCCCTACTCCTTCTCTTGCCTGAACTTCGCTTGTTGTTTCCAGATTCACACGACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGATCTTCGCTTGTTGTTTCCAGATTCACACAACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGAACTTCGCTTGTTGTTTCCAGATTCACATGACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGAACTTCGCTTGTTGTTTCCAGATTCACACGACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGATCTTCGCTTGTTGTTTCCAGATTCACACGCCATCGAAGCCTCCCTACTCCTTCTCTTGCCTGAACTTCGCTTGTTGTTTCCAGATTCACACGACATCGAAGCCTCCCTACTCCTTCTCTTGCCTGATCTTCATGGCTATAGAGGAGTCTCCTGTTAAGGCTCTGCCTGTTAAGGAGATCTACAACTGGATTCTGGACCACTTTCCTTTCTACAAGAATGCCCCGACCGGCTGGAAGAACAGCGTCAGACATAACCTCTCCCTCAACAAGTGCTTCCGCAAAGTCGACAAAGCGCCGAACCTGGGTAAGGGCTCGCTGTGGATGGTAGACCCGTTGTACCGCTCCAATCTACTGACGGCCCTGCAGAAGGCTCCATACCACCCATGCAGCTCCCTGGATACCAGCAGTGCGCCCTCCTCCGCAACCACCAGTGATGAAGAAAGTGATGTGAATATTGATTTAACATCTGAAGAATATCAGGACTATAGTTTTAGTGGTCTTGTTCGTGAGTCCGACTACATCTACGAACTTGGTTATAGCGACGAGCCCATTGCAGGGCTTTCAGAGCTAAATTCAAAAGTGGGTATGCCAGGGCAGGTTGTACTGACACTTACAGAGCCTTTTTTCAACCTAGGCCACAAACTGTACATTGATAACTGTCCCAAGAGCCCGTCAGGAAAGGCTGGAGGCGGGGGTGGTGGAGGCAGGTTGCCAGACCCGTCCCTGTTCCCGTACCTGGCCCGGCGGTTGGCAGCCGTGGAGGGCTCGGGGCCGCTAGATGACGTGGACGCAGCCGCAGCCATGCTGGAGCTCAAGCACGGACCACTGCGACGGGGTGAGTAA
- Protein Sequence
- MPGSVRIPPDLIKPNAENITQTFDFQEMPGSVCIPPDLIKPNAENITQAFDFQEMPGSVRIPPDLIKPNAENITQAFDFQEMPGSVRIPPDLIKPNAENITQAFDFQEMPGSVRIPPDLIKPIDFFQEGDGASEMRSEDDDLTSLTWLQDKNLLKGINLRTAGAGVQESPTSDYVDDSTSERDSSCSSVNSSSPTPPPTSAATPAPAVKNKHPHHIPYDPQIHTTSKPPYSFSCLNFARCFQIHTTLKPPYSFSCLNFACCFQIHTTSKPPYSFSCLIFACCFQIHTTSKPPYSFSCLNFACCFQIHMTSKPPYSFSCLNFACCFQIHTTSKPPYSFSCLIFACCFQIHTPSKPPYSFSCLNFACCFQIHTTSKPPYSFSCLIFMAIEESPVKALPVKEIYNWILDHFPFYKNAPTGWKNSVRHNLSLNKCFRKVDKAPNLGKGSLWMVDPLYRSNLLTALQKAPYHPCSSLDTSSAPSSATTSDEESDVNIDLTSEEYQDYSFSGLVRESDYIYELGYSDEPIAGLSELNSKVGMPGQVVLTLTEPFFNLGHKLYIDNCPKSPSGKAGGGGGGGRLPDPSLFPYLARRLAAVEGSGPLDDVDAAAAMLELKHGPLRRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -