Amod086233.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:155553915-155561368[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.74 2.2e+04 -2.1 0.0 29 41 189 201 185 204 0.90 2 8 0.019 5.6e+02 3.0 0.0 13 41 218 249 211 253 0.76 3 8 0.019 5.6e+02 3.0 0.0 13 41 266 297 259 301 0.76 4 8 0.52 1.6e+04 -1.6 0.0 19 40 323 344 308 345 0.72 5 8 0.71 2.1e+04 -2.1 0.0 29 41 373 385 367 388 0.90 6 8 0.019 5.6e+02 3.0 0.0 13 41 402 433 395 437 0.76 7 8 0.015 4.5e+02 3.3 0.0 9 41 446 481 443 485 0.78 8 8 0.018 5.3e+02 3.1 0.0 13 41 498 529 491 536 0.77
Sequence Information
- Coding Sequence
- ATGGTAGCTTCCGATGATGAAGAAAAATTATCTTTCGTGACGAGGCTTTGGTCACGAAAGATGAAATGCGTGCGACACGGTCAGCCAGGTAAATGGGACGCAACTCCCACCACGTTCTGTCATAGCCTGTATGTGCACGCGAGTGATAGTGACACATCTTCTCAACCGCCTTGGCCCCCTTGCATACGGCTAACGCCTCCGAGGGGGTTGGCTCGCCGGACGGACTTCCCGGGTTACAGCGTGGACCTACGCCAGCATCTGGGATATCTGCAAAGCTCGCTAGACGCCAGCGCCGCCCCAAGATGGAGCAAGCTCGGTCATTATTACTGCCTACAGACGGGGGCTGAGCAAGAGCTCCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGCCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGACAACACGGCCGTGTGCCGGCCCATTTGGGATTGCTATTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGGCTGCGCAAGAGCTCCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGTCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGATTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTTCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGTCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTTCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGTCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTCCAAGATCATAGGGGACGAGTGACAACACGGCCGTGTGCCGGCCCATTTGGGATTGCTATTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGGCTGCGCAAGAGCTTCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGTCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTTCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCATGTGTCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTTCAAGATCATAGGGGACGAGTGTACACCCTACTAGGAACCGTGCAGGACAACACGGCCGTGTGCCGGCCCATTTGGGATTGCTGTTGGGAGTCGGTTCTCAGCCAAGACTACAGGGCCCCACTGTCTAGGGCTGCGCAAGAGCTCCAAGATCATAGGGGACGAGTGTACACGCTACTAGGAACCGTGCAGGACAACACGGCCATGTGTCGGCCCATTTGGGATTGCAGTTCTGTTCTGGTTGCCGTAGAGAATAGATGTACGCCCTCTGACCTCCGCTTATCAGTGCTAGTGCCTACCGTGTGCGTCCGTGTGTGCCATACCCTGTACAGTGTAGATTCTATactaattaattcatatttttctGAGTACGTTTAG
- Protein Sequence
- MVASDDEEKLSFVTRLWSRKMKCVRHGQPGKWDATPTTFCHSLYVHASDSDTSSQPPWPPCIRLTPPRGLARRTDFPGYSVDLRQHLGYLQSSLDASAAPRWSKLGHYYCLQTGAEQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLTTRPCAGPFGIAIGSRFSAKTTGPHCLGAAQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVTTRPCAGPFGIAIGSRFSAKTTGPHCLGAAQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVYTLLGTVQDNTAMCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVYTLLGTVQDNTAVCRPIWDCCWESVLSQDYRAPLSRAAQELQDHRGRVYTLLGTVQDNTAMCRPIWDCSSVLVAVENRCTPSDLRLSVLVPTVCVRVCHTLYSVDSILINSYFSEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -