Basic Information

Insect: Allygus modestus
Gene Symbol: -
Assembly: GCA_963675035.1
Location: OY776117.1:93078169-93084916[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.49 1.5e+04 -0.7 0.0 57 75 44 62 42 65 0.87

2 10 0.1 3e+03 1.5 0.1 54 76 72 94 70 97 0.90

3 10 0.004 1.2e+02 6.0 0.0 53 78 115 140 95 141 0.83

4 10 0.0055 1.6e+02 5.6 0.0 39 76 141 178 138 181 0.82

5 10 0.014 4.2e+02 4.3 0.0 52 74 204 226 185 231 0.78

6 10 0.0029 86 6.5 0.0 36 76 258 299 244 302 0.70

7 10 0.03 8.9e+02 3.2 0.0 54 76 308 330 306 333 0.90

8 10 0.049 1.5e+03 2.5 0.0 54 76 382 404 380 407 0.90

9 10 1.8 5.4e+04 -2.5 0.0 64 77 423 436 418 438 0.83

10 10 0.00029 8.6 9.7 0.0 36 75 590 632 562 633 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.49	1.5e+04	-0.7	0.0	57	75	44	62	42	65	0.87
2	10	0.1	3e+03	1.5	0.1	54	76	72	94	70	97	0.90
3	10	0.004	1.2e+02	6.0	0.0	53	78	115	140	95	141	0.83
4	10	0.0055	1.6e+02	5.6	0.0	39	76	141	178	138	181	0.82
5	10	0.014	4.2e+02	4.3	0.0	52	74	204	226	185	231	0.78
6	10	0.0029	86	6.5	0.0	36	76	258	299	244	302	0.70
7	10	0.03	8.9e+02	3.2	0.0	54	76	308	330	306	333	0.90
8	10	0.049	1.5e+03	2.5	0.0	54	76	382	404	380	407	0.90
9	10	1.8	5.4e+04	-2.5	0.0	64	77	423	436	418	438	0.83
10	10	0.00029	8.6	9.7	0.0	36	75	590	632	562	633	0.81

Sequence Information

Coding Sequence: ATGACGGTGTTCTGGACGGGAAGAGATGGCTACTATACTCAAGTTCATTACCCGCGTGCAGGGGCCAGGCCACAACACCACTACACTGGGGTGGTCTGGTCAGGGCCGCCCGAGGGACAGATTGTTACATTAACCATTCCCCGCTTGTTAACCAGGGCCAGGCCACAAAACCACTACACTGGGGTGGTCTGGTCAGGGCCGCCCGAGGGACAGTTTATTACATTAACCATTCCCCGCTTGTTAACCAGGTTCAGGTCACAACACCGATACACTGGGCTTGTTAACCAGGGTCAGGCCACAACACGACTACACTGGGGTGGACTGGTCAGGGCCTCCGAGGGCCAGTTTATTACATTAGCCATTCCCCGGTTGTTAACCAGGGCCAGGCCACAACACCACTACACTGGGGTTCAGGTCACAACACCACTACACTGGGCTGGACTGGTCAGGGCCTCCGAGGGCCAGTTTATTACATTAGCCATTCCCCGGTTGTTAACCAGGGCCAGGCCACAACACCACTACACTGGGGTGGACTGCCATTCCCCGCTTGTTAACCAGGGCCATGCCACAACACCACTACACTGGGGTGGACTGGTCAGGGCCTCCGAGGGCCAGTTTATTACATTAGCCATTCCCCGCTTGTTAACCAGGTTCAGGTCACAACACCACTACAATGGGGGCCAGGCCACAACACCACTACAATGGGGTAAGCTGGTCAGGGCCGCTGGTAGGATAGTTTATTACATTAACCATTCCTCGCTTGTTAACCAGGTCCAGGTCACAACACCGCTACACTGGGGTGGACTGGTCAGGGCCTCCGAGGGCCAGTTTATTACATTAGCCATTCCCCGGTTGTTAACCAGGGCCAGGCTACAACACCACTACACTGGGGTGGACTGGTCAGGGCCGCCCGAGGGACAGTTTATTACATTAGCCATTCCCCGGTTGTTAACCAGGGCCAGGCCACAACACCACTACACTGGGGTGGACTGGGCCAGGCCACAACACCACTACACTGGGGTGGACTGGTCAGGGCCGCCCGAGGGACAGTTTATTACATTAGCCATTCCCCGCTTGTTATCCAAGGCCATGCCACAACACCGCTACACCGGGCTGGACTGGTCAGGACCGTCTGTGGGACAGTTTAATACATTAGCCATTCCCCGCTTGTTAACCAGGTCCAGGTCACAACACCGATACACTGGGGTGGACTGGTCAGGGCCGCCCGTGGGACAGTTTATTATATTAGCCATTCCCTGCTTGTTAACCAGGGCCAGGCCACAACATCACTACACTGGGGTGGGCAAGGCCACAACACCGATAAACTGGGCTAGACTGGTCCGGGCCGCCCGTGGGACAGATTATTACTTTAGCCATTCCCCGCTTGTTAACCAGGGCCAGGCCACAACACCACGACACTGGGGTAAGCTGGTCAGGGCCGCCCGTGGGACAGTTTATTACACTAGCCATTCCCCGCTTGTTAACCAGGGCCAGGCCACAACACCACTACACTGGGGTGGACTGGTCAGGGCCCCTCGCGGTACAGTTTGTTACAAGAGCCGCTTGTTAACCTCGCTTGTTAACCAGAGCCAGGCCACAACACAACTGAACTGGGGTAATTTGGTCAGGGCCACCCGTGGGACGGTTTATTATATTAGCCATTCCTCGCTTGTTAACCAGGGCCAGGCCACAAAACCACTACACTGGGGTAGACTGGTCAGGGCCACCCGAGGGACAGTTTATTACATTAGCCATTCCCCGCTTGTTAACCAGGTCCATGTCACAACACCACTACACTGGGGTAAGCTGGTCAGGGCCTTCGAGGGCCAGTTTATTACATTAGCCATCCCCCGCTTGTTAACCAGGGCCAGACCACAACACCACTACACTGGGGTGGACTGA
Protein Sequence: MTVFWTGRDGYYTQVHYPRAGARPQHHYTGVVWSGPPEGQIVTLTIPRLLTRARPQNHYTGVVWSGPPEGQFITLTIPRLLTRFRSQHRYTGLVNQGQATTRLHWGGLVRASEGQFITLAIPRLLTRARPQHHYTGVQVTTPLHWAGLVRASEGQFITLAIPRLLTRARPQHHYTGVDCHSPLVNQGHATTPLHWGGLVRASEGQFITLAIPRLLTRFRSQHHYNGGQATTPLQWGKLVRAAGRIVYYINHSSLVNQVQVTTPLHWGGLVRASEGQFITLAIPRLLTRARLQHHYTGVDWSGPPEGQFITLAIPRLLTRARPQHHYTGVDWARPQHHYTGVDWSGPPEGQFITLAIPRLLSKAMPQHRYTGLDWSGPSVGQFNTLAIPRLLTRSRSQHRYTGVDWSGPPVGQFIILAIPCLLTRARPQHHYTGVGKATTPINWARLVRAARGTDYYFSHSPLVNQGQATTPRHWGKLVRAARGTVYYTSHSPLVNQGQATTPLHWGGLVRAPRGTVCYKSRLLTSLVNQSQATTQLNWGNLVRATRGTVYYISHSSLVNQGQATKPLHWGRLVRATRGTVYYISHSPLVNQVHVTTPLHWGKLVRAFEGQFITLAIPRLLTRARPQHHYTGVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -