Amod010820.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Allygus modestus
Gene Symbol
-
Assembly
GCA_963675035.1
Location
OY776111.1:108712880-108716047[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.019 5.8e+02 3.8 0.0 18 34 28 44 19 57 0.82
2 22 0.044 1.3e+03 2.7 0.0 18 34 71 87 62 100 0.84
3 22 0.047 1.4e+03 2.6 0.0 19 34 115 130 106 143 0.84
4 22 0.044 1.3e+03 2.7 0.0 19 35 158 174 149 187 0.83
5 22 0.019 5.7e+02 3.9 0.0 19 39 201 221 192 231 0.81
6 22 0.048 1.4e+03 2.6 0.0 19 35 244 260 235 273 0.83
7 22 0.028 8.3e+02 3.3 0.0 19 34 287 302 278 314 0.84
8 22 0.023 6.9e+02 3.6 0.0 18 34 367 383 358 396 0.84
9 22 0.047 1.4e+03 2.6 0.0 19 34 411 426 402 439 0.84
10 22 0.044 1.3e+03 2.7 0.0 19 35 454 470 445 483 0.83
11 22 0.048 1.4e+03 2.6 0.0 19 34 497 512 488 524 0.84
12 22 0.065 2e+03 2.1 0.0 19 34 540 555 531 567 0.85
13 22 0.051 1.5e+03 2.5 0.0 19 34 583 598 574 611 0.84
14 22 0.048 1.4e+03 2.6 0.0 19 34 626 641 617 653 0.84
15 22 0.028 8.3e+02 3.3 0.0 19 34 669 684 660 696 0.84
16 22 0.023 6.9e+02 3.6 0.0 18 34 749 765 740 778 0.84
17 22 0.047 1.4e+03 2.6 0.0 19 34 793 808 784 821 0.84
18 22 0.044 1.3e+03 2.7 0.0 19 35 836 852 827 865 0.83
19 22 0.048 1.4e+03 2.6 0.0 19 34 879 894 870 906 0.84
20 22 0.065 2e+03 2.1 0.0 19 34 922 937 913 949 0.85
21 22 0.051 1.5e+03 2.5 0.0 19 34 965 980 956 993 0.84
22 22 0.32 9.7e+03 -0.1 0.0 19 34 1008 1023 1000 1034 0.85

Sequence Information

Coding Sequence
ATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGAGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACGTATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGATGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACGTCCAGAAGTGAAATACATTCCAATTATATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCTGCAGCCACAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGTTGATCTGCCGGAGGCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCACAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACGTATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAACCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACGTATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACGTCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCTGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCACAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGGCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTGTGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAAGATGATCTGCCGGAGTCCGCAGCCGCAGCTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGGCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACGTATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAACCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACGTATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACGTCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCTGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCACAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTACATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAGGATGATCTGCCGGAGGCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTGTGTTGTTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATCGACGTGTATGTTGTTGCAAGATGATCTGCCGGAGTCCGCAGCCGCAGCTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTGAAATACATTCCAATTACATATTGACGTGTGTATTATTGCAGGATGATCTGCCGGAGTCCGCAGCCGCAGTTGCTGCCGTTCCGCTGAGCCAGCTCCCAGAAGTGTTAGAATTGTTTGCATCCAGAAGTTGA
Protein Sequence
MLLQDDLPESAAAVAAVPLSQLPEELELFASRSEIHSNYVSTCMLLQDDLPESAAAVAAVPMSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAATVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQVDLPEAAAAVAAVPLSQLPEVLELFASRSEIHSNYISTCMLLQDDLPESAATVAAVPLSQLPEVLELFASRSEIHSNYVSTCMLLQDDLPESAAAVAAVPLSQLPEVLELFASRSEIHSNYMLQDDLPESAAAVAAVPLNQLPEVLELFTSRSEIHSNYVSTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAATVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPEAAAAVAAVPLSQLPEVLELFASRSEIHSNYISTCVLLQDDLPESAAAVAAVPLSQLPEVLELFASRSEIHSNYISTCMLLQDDLPESAAAAAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPEAAAAVAAVPLSQLPEVLELFASRSEIHSNYVSTCMLLQDDLPESAAAVAAVPLSQLPEVLELFASRSEIHSNYMLQDDLPESAAAVAAVPLNQLPEVLELFTSRSEIHSNYVSTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAAAVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPESAATVAAVPLSQLPEVLELFTSRSEIHSNYISTCMLLQDDLPEAAAAVAAVPLSQLPEVLELFASRSEIHSNYISTCVLLQDDLPESAAAVAAVPLSQLPEVLELFASRSEIHSNYISTCMLLQDDLPESAAAAAAVPLSQLPEVLELFASRSEIHSNYILTCVLLQDDLPESAAAVAAVPLSQLPEVLELFASRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-