Aoxy006551.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- MBD-R2
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000081.1:790450-809828[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1 5.6e+03 -2.5 0.0 49 72 117 141 113 143 0.81 2 2 4.5e-17 1.2e-13 50.9 0.0 5 58 736 789 732 816 0.88
Sequence Information
- Coding Sequence
- ATGGCcgtaaaaaaatgttgtattgaCTACTGTAAATCATGTTCTACGAGAAAGGAAGACAAAGGTGTAACATACCACAAGTTTCCCAAAAACACTTTATTACGTCACCGTTGGATATTCGTAACACATAATGAACACATAGACACCGATTTGCCCAAGTACGTGTGCTCAcggcatttctgtaaaaacGATTTTCAAATGTACAAGGACTCTAAATACATATTGAAATCAGATGCGGTACCTTCAATATTTCCGTGGGACTCTGACACTGAAGAAGAATTAGAAGCTTTAAATATGCCAGGAGAAGGTAGTAGTACCAAAGAGTGTGAAGTTGAGAATGTGGATGCTATCAAGAAGTATATTGAAGCACAAGAGAAAGAGATTCAGGACCAGAAGTTAGCTGATTTTCAGCTTAGTGAGAAGAGTAATGATGTCACAGATAATAAGCCAAGTCGAGAAGAAACAATGTCTGTGGCCAGTAGTGTGATTGATATGATAATCAGTGAGTCTGAATTAGAGATTGCCAGGAAGCAAGATGTGAAAAGCAAGCAGATTTTCAGTCCAGGGGACAGAGGTAACGGCAGTATGGCGCTTTCCGTCGGGTCTAAGGTGGAAGCGAAGGACTTCGGTGAAGAATGGTATCCAGCAGTCATTATAGAGGTCGACTATGACGATATGGAGGTGCTTGTACATTATGAAATTGATTCCAAAAAACATGACGAATGGATAAGCGTGAGTAGTCCACGTCTGCGACCCGTCAGTACGTCCACTCCTAGCAGTAGTACTACAACTACGACTACGGTCAAACCAGGCCCCAGTTCTGAAGAGAGCCTCACCGATACCATACCGATAGCCAATTTGAAGGAGGAACCTAAAGATGTGAAGGCAGAAGACAAGATTAAGCTAAGCTATGCAGTGGGCGAGCGATGCCTCGCAAGGTGGCGCGATAATAGGCGATTTATAGCTACCATACTTAATGATTTGGGAAATGGCAATTACGAGATTATTTTCGATGACGGTTGTCATTGGACGTGTAACACGTCGCGGCTTCACAAACAGCGCTCGAAAAAGGGCGATGTTACTGACGTGACGTCTGCTCCCGGTCCGTACGGGGCCGGACCTAGCAATGCGACCCCGCAACCCACCACCCTGTACCCTGCCTACCACACCCACCTGTTTGACCCCACTCGCGATTACCTAGGCTCCAAAAGCGAACGACGCGAAATGAAAcgtaaattaaacataaaagaaatattcaatataggacagaaaaaatataagaagCAGAGGGTTCAGAaggaaaagacacagaaaatgGTGGAAAGGAAACCGAGGGTTATGAAGAAGAGGCGGGAGAAAGTTGTGAAGCTGAAGCTCGAGAGTGAAGTCAAGATTGAGGTGAAGACTGAACTGCCTGCCGTAGATGCCGTAGCTTCAATAATTGGCACGGTAAGCCAAGACGAAACACTTGCTCAGGAAGATACAGAAGACGAGAACCCGGAACAAGTCCAAGACGATATGGAACAAGACATGAAACTAGAAACTAATGATAACGATGATGAAGTGGCCGCAAGTAATGGTATCAGAAATGAAGATCTAATTCAGTTGGAAGATCTTAAATGTGAATCAGACCCGGTTCTAGAAGAGGAGGTGAAACTAGAACAGTTCGATAAACCTGACGATGTCCGACACGAGGAAGTGATTGACAGAATAAAAGAAGTCATTAACAAACTGGAGGATGGCTTGAACCAAGTCGAAAAGATCAGCTCGCCCAAACCGGAACCGAAAGAAGAAGTTGTTACTGTTGGAACTCCAGATGAAAAGTCTCCAAAATTAGAAAGCATACCAGTAAAAGTGGAAAATTCAAAAgtgaaaatagaaaaagaaattgaaaaaccgAAAAAGCTGAAGAAGGGTAAAAAGCTAAGATTGTTACGGGAAGAAAATGTGAATAAACAAGTGGAAAAAGTGAAAAATGAGTTAGAACAGGTTCGGAAGCAAGTGGACGAGATGCGGAAACAGATGTTGAAGCGGTCGGAGTGCATGAAGACAGAGCCGGGGGTCGAGATGAGCGAGAGCTTCCTGCTGCCGGGCGAGTGGTGCTGTCACTGGGTTAATGGACAGCCCGTCGGCACCGTGAGCGAGATCGAGAGCGAACACAAGCAGGACGCCAGCGGGAAGGCGCCCCTACCCAGGAGAAGTGTGCAGGTTGAAGACAAGAGACTACCGCCGGGCTGGACCAAACACATGGTTCGCAGGAGCTTCGGGAATTCTGCCGGCAAGTGGGATGTTGTGCTCATCAGCCCCGACAACCGAAGATTTCACACCAGGAACGAAATACGCACGTACCTCGAGAACAACGCGAACTTGGGTCTGTCGGCATACTCGCACGCGCTGACGGACTTCGGCGTGCACCTGAAGCTGGCGCGGCGCATGGGCTGGCTGGCGCGCACGCCCGGCggcgcgccccccgcgccccccgcgccctccGCGCCGCGCGCGCTGCCCGACACCTCGCCGCTCGTCAAGCGCCGGCGCCGCGGCCTCAAGAGGGACGCCGAGCTCAAGAGGAAGCCTAGGATTACTATTAAGATGAAGATCCCACGGGCGGAGGCCGATCTGTCAGGGGAAGCCGCAGCTGCGTCTCCAGGTGTGGATGGCAGTATTCCTGATGACGCGAACATTGAAACACCCACGTTAGAAGATGGATATGTATACGTAGGGTCGCTAAAAGTGCAAATAATCGAGAACCTACTTCGTTGCCCGGCCGAAGGATGTTTCAAGAACTTCCGAAACAATACTCTACTGAAAATGCACATAAAACACTACCACAGAGAACTGAGAAAGATGATGGGAGCAACTCCCAAAGTCCTAGATCTAGCGTACGCCAGGACCATGCCAGTGGCGGCCGAGACTCCTCGCTCGAAAGACGAACAGAAGATCATTAAGGTCAAGATACCAAGGCCACCGAAACGTGAGGAGCCCAAACAAGAAATTAAGGACGTTCATGTCGAACTACAAGTTGACACCGGACGTCTAACACCCGTCAATGACCCCGATATTCCCATACCGAGGAGCCAGGATTCACCCAAACTGCGCCAAGCGTTGATCAACAAGCCTGTCAAACGACCCCGAGTGCTGCTTCCAGTCCGAAGAGTTGAGCCCGAACAGGCGATACCAGACTCCATGAACGAGGATATAGACATTGAGGACACGCTGCAAATTGAACCGATCATAGAAATCCCGACTTTAGATGTGCCTTTGGACTTCGAGAGTGCCATTTCCACCCACACCGTGACTAAGCCTGTGCTAGAGAAGAGAATGAGGAGTGAGAAGAGGCGGAAGACTTTCGCTGTGGCCGCAAAGAGGCCTATCAGTGACGACGAGGACTGGTTCGCTATGAACTCTGACGTTGAGACCCGCTCCAGTTTCCCGCGGTCTGGAACGCCTGATTCTAAGATTGAATGCAAAGCTGTGCCGATTTCGTCAGAGTTTAGTGAAGAGAATAAGGAACCCAATCTATATATGACGACTGAGAACGGCGAGCGCATAAAGATAGTGCACATGAAACGCGAGGAGATCATCAACTGCCACTGCGGGTTCCGCGAGGAAGACGGCTTGATGGTGCAGTGCGAACTGTGCTTGTGTTGGCAACACGCGCTCTGTCACAACATACAGCGCGAGTGTGACGTGCCAGAAAAATACACATGCAGCATTTGCCTGAACCCTCGTCGCGGTCGTCGCTCGCAGCGGTTCGTGCATGACCAGGACCGCATGTACGAGGGGCTGCTGCCGGGGGCGCGGCCCTGCGAGGCGCTGCGGCGCAGCCACGAGCTGGCCGGGAACCTGCTGCGGATAGATGACGCGCTCAACGCGTTGAGGATCAAGTACTATGTGGCCACCAAAAAAGACCATCCAAAGCTGTACCTATGGGCCCAAGACTGGGAGCAGGCAGAGATTCAGTACACGCAAGAGAAGCTTAACTCTGACTATTCGGacttgaacatcatgatcagtTCCATCGGCAAGGAGAACCTGCCCGTCAAGCCGGAAGACGTCAAAGACATGCCCATGGATATACGCACCCCGCCCTCGGAGGAACATGAGACTGACAGGTACATACAAAGGGAAGGCCCTCTCGGAAATCAGAGTTTGCTCAGTGGGCTGCTGTCGAGTCCCGGCGGAGCGTCACTTGAGCTACCGATCAGCTCGTCCGAGTTGGAACGACTGGCCAAGTCTGTTGAAGAGCAAGAGGCCCAACGTCCAGTAATAATGGCCCCGCAGCCCGAGGCGGCGATAGAGAACAGTGTGTGTCGCGAACGTTTGTTGAAGCACCTGCAGCGATGCCAGGCGCTCATCGACGCTCGACTGGATTCTATCGAGGCGCAGGTGGCAGAACTGGAGTCTCAAGACCCATCGTTGGAGGACGACGAGACAGCGGATTACTTCCCGCGCACCAAACAGACCATACAGATGATGATGCGCGACCTTGATAACATGGAGGAGCTCGCAGTCATCACCTAA
- Protein Sequence
- MAVKKCCIDYCKSCSTRKEDKGVTYHKFPKNTLLRHRWIFVTHNEHIDTDLPKYVCSRHFCKNDFQMYKDSKYILKSDAVPSIFPWDSDTEEELEALNMPGEGSSTKECEVENVDAIKKYIEAQEKEIQDQKLADFQLSEKSNDVTDNKPSREETMSVASSVIDMIISESELEIARKQDVKSKQIFSPGDRGNGSMALSVGSKVEAKDFGEEWYPAVIIEVDYDDMEVLVHYEIDSKKHDEWISVSSPRLRPVSTSTPSSSTTTTTTVKPGPSSEESLTDTIPIANLKEEPKDVKAEDKIKLSYAVGERCLARWRDNRRFIATILNDLGNGNYEIIFDDGCHWTCNTSRLHKQRSKKGDVTDVTSAPGPYGAGPSNATPQPTTLYPAYHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKYKKQRVQKEKTQKMVERKPRVMKKRREKVVKLKLESEVKIEVKTELPAVDAVASIIGTVSQDETLAQEDTEDENPEQVQDDMEQDMKLETNDNDDEVAASNGIRNEDLIQLEDLKCESDPVLEEEVKLEQFDKPDDVRHEEVIDRIKEVINKLEDGLNQVEKISSPKPEPKEEVVTVGTPDEKSPKLESIPVKVENSKVKIEKEIEKPKKLKKGKKLRLLREENVNKQVEKVKNELEQVRKQVDEMRKQMLKRSECMKTEPGVEMSESFLLPGEWCCHWVNGQPVGTVSEIESEHKQDASGKAPLPRRSVQVEDKRLPPGWTKHMVRRSFGNSAGKWDVVLISPDNRRFHTRNEIRTYLENNANLGLSAYSHALTDFGVHLKLARRMGWLARTPGGAPPAPPAPSAPRALPDTSPLVKRRRRGLKRDAELKRKPRITIKMKIPRAEADLSGEAAAASPGVDGSIPDDANIETPTLEDGYVYVGSLKVQIIENLLRCPAEGCFKNFRNNTLLKMHIKHYHRELRKMMGATPKVLDLAYARTMPVAAETPRSKDEQKIIKVKIPRPPKREEPKQEIKDVHVELQVDTGRLTPVNDPDIPIPRSQDSPKLRQALINKPVKRPRVLLPVRRVEPEQAIPDSMNEDIDIEDTLQIEPIIEIPTLDVPLDFESAISTHTVTKPVLEKRMRSEKRRKTFAVAAKRPISDDEDWFAMNSDVETRSSFPRSGTPDSKIECKAVPISSEFSEENKEPNLYMTTENGERIKIVHMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQRECDVPEKYTCSICLNPRRGRRSQRFVHDQDRMYEGLLPGARPCEALRRSHELAGNLLRIDDALNALRIKYYVATKKDHPKLYLWAQDWEQAEIQYTQEKLNSDYSDLNIMISSIGKENLPVKPEDVKDMPMDIRTPPSEEHETDRYIQREGPLGNQSLLSGLLSSPGGASLELPISSSELERLAKSVEEQEAQRPVIMAPQPEAAIENSVCRERLLKHLQRCQALIDARLDSIEAQVAELESQDPSLEDDETADYFPRTKQTIQMMMRDLDNMEELAVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049991; iTF_01342240; iTF_01342291;
- 90% Identity
- iTF_00049991;
- 80% Identity
- iTF_00049991;