Abil011899.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- egg_1
- Assembly
- GCA_003054995.1
- Location
- NBZA01031432.1:1701-5174[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9 1.1e+04 -3.9 0.1 31 38 554 561 537 562 0.81 2 2 9.9e-13 5.7e-09 35.4 0.0 7 73 597 657 594 661 0.88
Sequence Information
- Coding Sequence
- ATGGATTCATTGAAACAAGGAGAACCGTCTGAAGAAGTCATAAttcttgatgatgatgattatgttCGCCCTACCGTGCCAAGCTGGAAAAATCCTTGTATTAACTCAAATTGCCCGAGTAGTTCCGAATTTGAAATGGTGAAGCCACCTCTTTTTTGTCTTTCatattatcaaattaaaggCAGATCTAAGGACCAAAAAGTTTGTCAAGTTTGTTTTGATGAGGCATTTGCACACTTTGGGAAACTTAGTTCACTTCTGTGCGAAGGAAAGAGTCTTATGTCGGTGGACTTTCCAAGTGTTAATGAAACGGTAACCCTAGATTCAGACTCAGAAGATGATGAATCAGATGGTATATACATTGATAAAGACAGTGTGGAGTTTATATCTAACAACTTAGATGACATAATAAAGGAAACAATCAGCAAGTGCAATGTAGATAAGgcaataaacaaaactttggAACAGCTGAATGAAGCCACAGCGGCTTCCGATGCCAAAATTAATGATCTTAAAGTAATGGTATCTAGTATACGCAAGGGGATGGATCAGATGATTTATGATCTAACAAATGCTCTTTCTACAAACACTGTACCAACAAATGAAGTTATTATAATTGATGAATTCCAACCAGAGATTCCTCTACGAAATGCCAGTAAGCCATTAGACTTGCCCAAACGAGGTCCGTTGGCGTTACCAAGTCTGACCATTGGACATACTTATTTTGTAAAGCGTTCAACTGTTCAGCCTATGTCTTGGGCAAAATCGACGTTGGTCAGTATCATACCGATTGGGTCGGTTGTGAGTGGGATTATCATACGTTCGCCAATGTTCCAAGTCAGTCGTACGAATACACGTGATAGCAACGATCCTAACATGATACGTATAGTGGATGGAAGATCATTAGCCTACGCTGAACCATTGCCTGTATTGCTTGAGATTGGCAAACGTGTAATTGCACTCTTTCGAGCACCTCTAGAATCACCATCCAAACGGGATATGTATTTTCAAGGAGTTGTTGGCGAATTTCCTTCTGCCTTAAATAATTACCGatatttagtattttttgATGATGGTTATGCATTATACGTTCATCATAACCATGTATTTCCAGTCTATGAATCCTCTAAAGAAGTCTGGGAAGATGTCTATGGGGACTCTAGAccatttataaaaaaatatctaATGGAATATCCAAATAGATCTATGGTTAAATTGGAAAAAAATCAGCGAATTCGTACTGAATACAAAGGCAAATGGTATGACAGCATGGTCATTGAAGTGGACTGCTCTTTGGTTGagatgcattttattttattaaaacgtgTCGAGTGGATTTATCGTGGCTCACGTCGGTTACGCACAATGTATCAAGAGGTGCAAGCTGCAAGTAGTCTGCATAAGCAACGAAATGCACGTGCGCGTAATCGTCCGGTAACGGGTGCTCCATATGTACAATACAGTTCTGTCCAGGATGATCCCGATGTAGTATTCGTATCGCAGGGGCCTGCAAAGAATCCCGTTCAAATTGAGGCTCGAGCAGTTGCACGTAAAAGTACAAGGTCTGCTGCCTCAGTTTCTTCCACTGTCTTACCAACACCAACGGTACAAGAGCCACCACAATATATCAGACCCCCACAGAGGGAGGAAGTTAATCCTGGGAAAATAGTATACTACACGCCGCggaaacaaaataatatatttaaactgTATCAGAAACATGCCTGCGGAGAGGCATGCAATGAACAAATGCTAACCACTATTGATCGACTAGCAAGCTACGGCCCGCTTGCAAAACCGTTGTTATGTGGCTTTAACAGATTagaatacaaattaaaaagcaaaaagccaataattatatacaagGCTCCATGCGGCAAATCTGTACGTAATATGCAAGAGCTTCATAATTATTTACGGACAATCAGAAGCAGTTTAACTGtagatttcttcaattttgaTCCTTGGGTGCGTTGTCTCGCGGAATTTGTTCTTGAATCGAATGCGGTCATAAATAAGGATCTATCAAAAGGTCTTGAACCGATTCCATTACAAGTTGTTAATTATGTGGATAATACGACATGCGATTTTACAAATTACTCAACGGCTAGGACACCTTTGCAAGGAGTCGATTTAAATTTGGATTCTGAATTTCTCTGTGGTTGCGATTGTGAGGATGATTGTAGCGATAAATCAAAATGCGCTTGTTGGAAATTAACTGCAGAGGGAGCAAAGTATCTAGATCGGAATGCCGATAGTGTTGGATATGTTTATCGACGTTTACTGGAACCAGTTATTACGGGAATCTATGAATGTAATTCAAGATGTAAATGTGCAAAGACATGTTTGAACCGCGTGGCACAAAATCCATTACAACACAAACTTCAGGTTTTTAAAACCAGAAATCGCGGATGGGGTATTCGATGTTTAAATGACATTCCACAAGGAgcttttatttgtatttatgctGGTTGTTTGCTTACTGACGAAATGGCGAATGCAGACGGTGTAAATTCAAATGATACATATTATGCCGAattagattttattgaatCAGCTGAACACGCGAAAGAAGACTATGAAGAAGAAGCGTATGACAGTAATGACGAAAACGAAAAGATTTCAGGCTTCCCTGCAGCTTCTAATAAACAGGTTTCAAATATAGGAAATATTGCAGAGAACTTAAATAATGTAGAAACTATGGATGTGGATGTGCcacaaaataatattgaaataaatagtTCTTATAATCAAGAAGCATCGATTCGTAATCGTTTGCGAAAGCGCGATAACGAAATTAACTATGGAAAATTAGATGGAAATGATATAAACCTAAgtgatgaagaggaagaagcgAGGGAACCATCAAGTTTTAATCCAAAAATTGACCCCGAAGGCCAAGAACGCAAAAATCCCACTGTAAGAACAATGTATGGTGGCAATGATTCGGTTTTTATAATGGATGCAAAAGATTTTGGTAATTTAGGACgatttttaaatCATTCTTGTGCGCCTAATATTTTTGTccaaaatgtttttgttgacACTCATGATCTTCGTTTCCCATGGGTTTCTTTTTTTGCGAGTCAATATATTCGTGCTGGGACAGAGCTAACATGGAATTACAACTATGACGTTGGCAGTGTGATAGgaaaaacattattttgcaattgtgGCA
- Protein Sequence
- MDSLKQGEPSEEVIILDDDDYVRPTVPSWKNPCINSNCPSSSEFEMVKPPLFCLSYYQIKGRSKDQKVCQVCFDEAFAHFGKLSSLLCEGKSLMSVDFPSVNETVTLDSDSEDDESDGIYIDKDSVEFISNNLDDIIKETISKCNVDKAINKTLEQLNEATAASDAKINDLKVMVSSIRKGMDQMIYDLTNALSTNTVPTNEVIIIDEFQPEIPLRNASKPLDLPKRGPLALPSLTIGHTYFVKRSTVQPMSWAKSTLVSIIPIGSVVSGIIIRSPMFQVSRTNTRDSNDPNMIRIVDGRSLAYAEPLPVLLEIGKRVIALFRAPLESPSKRDMYFQGVVGEFPSALNNYRYLVFFDDGYALYVHHNHVFPVYESSKEVWEDVYGDSRPFIKKYLMEYPNRSMVKLEKNQRIRTEYKGKWYDSMVIEVDCSLVEMHFILLKRVEWIYRGSRRLRTMYQEVQAASSLHKQRNARARNRPVTGAPYVQYSSVQDDPDVVFVSQGPAKNPVQIEARAVARKSTRSAASVSSTVLPTPTVQEPPQYIRPPQREEVNPGKIVYYTPRKQNNIFKLYQKHACGEACNEQMLTTIDRLASYGPLAKPLLCGFNRLEYKLKSKKPIIIYKAPCGKSVRNMQELHNYLRTIRSSLTVDFFNFDPWVRCLAEFVLESNAVINKDLSKGLEPIPLQVVNYVDNTTCDFTNYSTARTPLQGVDLNLDSEFLCGCDCEDDCSDKSKCACWKLTAEGAKYLDRNADSVGYVYRRLLEPVITGIYECNSRCKCAKTCLNRVAQNPLQHKLQVFKTRNRGWGIRCLNDIPQGAFICIYAGCLLTDEMANADGVNSNDTYYAELDFIESAEHAKEDYEEEAYDSNDENEKISGFPAASNKQVSNIGNIAENLNNVETMDVDVPQNNIEINSSYNQEASIRNRLRKRDNEINYGKLDGNDINLSDEEEEAREPSSFNPKIDPEGQERKNPTVRTMYGGNDSVFIMDAKDFGNLGRFLNHSCAPNIFVQNVFVDTHDLRFPWVSFFASQYIRAGTELTWNYNYDVGSVIGKTLFCNCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -