Abil002203.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003054995.1
- Location
- NBZA01006098.1:6317-9545[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-108 7.6e-104 347.1 32.1 1 300 272 560 272 560 0.94 2 2 0.027 4.6e+02 -0.2 5.4 124 170 579 625 562 635 0.46
Sequence Information
- Coding Sequence
- ATGGATGTGGGTGGCGGACGTCGTCGAGCTCCCTCAAAGTCATCCGCCGAGGACCAAGCACTAGACTTGATTGCAAAGGAAACGAGAACTTCCTATACAGGAGTACTACTGGAGACTGGAGATTCAGTCTTGTTTTGTGCATCCTGCGGTGAATACGTTGACTATTTACTAATTGTCACGAGGTGTTTGTCATTACGAAGGCTGATTGTGAACTTACCGTGTGCTTATAATAATGGTGACGGCGCCGTGCTTATCAGTCTGCGCATACCCCAAGTGGGACTTAATTCTGCAATCTCGAAAGATGCAGTGCGCTTCGCTCTCAGACTGTTTGCCACTCACGGAATCGGATTCTTTGACGAATTCGATTATCGTGCGAGCAACGAGTGCGATAATTCAACGAAAACGTTGGTCAAAAGTAAACCACATTCCACTATGATAAACGTACCGGAACGTGATATGGATATTAGTCGTAAGCCGCCCTCGCTCCAGGGCGAAGGTGACAGTGCCAGCACGACAATGGGCCAAACAAAATCGAAAATTGTAGATGCAATCGATGACGGTCTGCAACGCGTGAAGAATCCGCCAGCTGAAAACGCTTTGGCAGGCGGCCAGCTTGACGTTATTTCGGAAACCGACACTGCCACCGCAAATACGACGTCGACGGCCTCATTGTTAGCTGATGACGACGACTACGAGATCGATCACGACGGGTTGTTAGGCAATAATGGCAATCCTCCTGATTACGATAAAGCGACCACGAATATTTCCTGCTGTGTATCCGTTGAACAACTTCTCGAAAGTGAAAACCATGAAGCGGAGGCTCGATTGCTGGCACGTCGGGCAGCGCGTGCTGAAGCGCGAGAGATTCGCATGCGAGATCTAGAGCGACAGCAACGCGAACAGGAGGAAAACGCTGATCGGCAGTTTGACATGCTTAGCGAACCGCTCACCCGGCGCCCGGCGACGGTGTCCAGATATCTTTCTAGCCGACGCTCGTCCGAGGATTCGTTAGAGGATACTGGCAGCCTGCGAGATCTCCGACATGAACTTAAAGAAGTTGAGGAGAAATTCCGTAAGGCGATGATAGCAAATGCTCAGCTGGACAATGATAAGGCTGCGCAAACGTATCAATTGGAATTATTGAAAGATCGCTTAGAAGAATTGGAAGAAGACCTGTCGCAACTGAAAAGAGAGCATAAAGACAAATGTAGAGATTTTGAGCAATTGAAGCGTTTAACTGCGCAGATCAAAGAGGAGTTAGCAATTTACAAGAACGAGTTAGAAGAGCGAGATCGACTCATTGCTGAAAAGGGCCTAGTAATTGTCAGTACCGAGGAGTCGGTAACGAACGAAGGCGAGGGTATTACCAACGGGCCTATGAAAATTCGTCGTGCGTTGGTCACCGCTGAAAATGCCCATCTTTTGGAGAATGCGGGCGAGGGTAGCCTCGATGTGCGGCTCGCGCGTTTTGCCAAGGAGCGAAGCGAGTTGCTAGATCAAATTAGTCATTTAAAATTAGAATTAGACGAAGAGAAGAATAAAAGGAGGAAAGGAAATAGCGGTTCGATATTGAACGGTCCTGATACGGATTGCGATGCTGCTGACTTACAAAGGGAGGCAAGTAAACAACTGGCAGAATATAAATTCAGAGCGCAAAAAGCTGAACAGGACGTCGCAACATTGCAAGCAACTAACGCTCGCCTTGAGAGTCAAGTCATCCGATACAAAACCGCAGCGGAAGTGTTGGAGAAGAGTGAAGAGTCGTTGAAATCAGAAAAACGAAAACTGCAGCGAGAGGCACGGGAAGCTCAGAATAGAGCCGAAGAGCTAGAAGTATCAAATACACATCTAACCAAACGATTGGATAAGCTCAAAAATGCCAAGTCCGCCCTTTTTAAAGAGATTTGA
- Protein Sequence
- MDVGGGRRRAPSKSSAEDQALDLIAKETRTSYTGVLLETGDSVLFCASCGEYVDYLLIVTRCLSLRRLIVNLPCAYNNGDGAVLISLRIPQVGLNSAISKDAVRFALRLFATHGIGFFDEFDYRASNECDNSTKTLVKSKPHSTMINVPERDMDISRKPPSLQGEGDSASTTMGQTKSKIVDAIDDGLQRVKNPPAENALAGGQLDVISETDTATANTTSTASLLADDDDYEIDHDGLLGNNGNPPDYDKATTNISCCVSVEQLLESENHEAEARLLARRAARAEAREIRMRDLERQQREQEENADRQFDMLSEPLTRRPATVSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEDLSQLKREHKDKCRDFEQLKRLTAQIKEELAIYKNELEERDRLIAEKGLVIVSTEESVTNEGEGITNGPMKIRRALVTAENAHLLENAGEGSLDVRLARFAKERSELLDQISHLKLELDEEKNKRRKGNSGSILNGPDTDCDAADLQREASKQLAEYKFRAQKAEQDVATLQATNARLESQVIRYKTAAEVLEKSEESLKSEKRKLQREAREAQNRAEELEVSNTHLTKRLDKLKNAKSALFKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -