Ates012512.1
Basic Information
- Insect
- Aleiodes testaceus
- Gene Symbol
- -
- Assembly
- GCA_963565655.1
- Location
- OY751423.1:4197128-4199488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.11 13.2 0.2 1 20 153 172 153 173 0.96 2 13 0.005 0.42 11.3 4.2 1 23 181 204 181 204 0.93 3 13 2.8e-06 0.00023 21.5 0.9 1 23 210 232 210 232 0.98 4 13 9.4e-05 0.0079 16.7 0.0 1 23 343 365 343 365 0.98 5 13 0.0003 0.025 15.1 0.3 2 21 375 394 374 395 0.93 6 13 0.00023 0.019 15.5 2.7 1 20 415 434 415 437 0.92 7 13 0.0016 0.13 12.9 0.7 1 23 442 465 442 465 0.95 8 13 1.1e-06 9.1e-05 22.8 0.3 1 23 471 493 471 493 0.98 9 13 0.0018 0.15 12.7 6.3 1 23 500 522 500 522 0.98 10 13 0.0003 0.025 15.1 0.4 3 23 530 550 528 550 0.97 11 13 0.00035 0.029 14.9 0.2 1 23 556 579 556 579 0.96 12 13 0.42 36 5.2 0.1 1 23 593 615 593 615 0.93 13 13 1.3 1.1e+02 3.7 0.0 2 23 743 764 742 764 0.94
Sequence Information
- Coding Sequence
- ATGGAGACATCGGACAATGATCAGTACGTGACGTACTCATTGACATCGGTCCACGATATTCAACAGTCGATAGTATCGCACGAGGAGATATGCGAGCCAGCTGAGATTTTAGCAACTGAATCACAAGTAGTTGAGATACTTGGTGAAAGATCATCATCTGACGATGAGCATGAAGTTGTTTATCCGATTTACATAAAGCAGGAAGAAGCGCCTCAGTACACATCAGGTGACGACGAATCAATGGCAGTTGAGGCGCTCCGTCAATTGGGCGGAATGTATCCCTCTTACGCTGAGAAGAAGCTGCAGAGCCTCGAGGAACCTCCAAAAGACGATggaacagaagaaaaaagcgTCAGTTACAACGAGAACTTTAATAGCACCGAGGACAAAACATCGCAAGCGGAAGAAAGCTCAGAATTCGACAGCAGCGCCGCTGAGCGGAAGAATTTCGGGAAATTTTCGTGTCCAACGTGCAGCGAAAAATTTGAACGTAAACTAGACCTGAATAATCATCTAGTTTGTCATCAGGTTGATCGTCCTCATGCCTGCAGAACGTGCGGCAATTTATTCCGTTCGAAATCGAGTCTCCAGATTCACATGTCGCATTTTCATAATCAAGAGAAGACGCACAAGTGCACGATATGCGGTGCTGACTTTCAACGACCATCCTCATTATCAAATCACATGAAAATACATACTTATGTCGCTGGAAGAGCTCTGATTGGGCAAACTGATGGTTTTGCTGAACAATCGAGTACAGCAGTGCAAAATCTCCAGAATTACGAAGTTACACAGGTGAATTGGCAGGGTTACACGTTTCAGAATGAGCAGAATGATCTTCAGGAATTTGCGGTTCTTCCGAATGGTGAAGTAGCGCAGTTTGAGTACTCTGGGATCAATCAGATCGGTCAGAcgtataatttgaatttaaatacgTTTACTAGTACCGATGGATTAGTCAAAGTCGAGACAATACCATTCGAACAGAGGAGAAACGAATTTGTCACAGTTGAAATCGATAAAGCATTCAGCTGCAATCAGTGCGGTGCTACATTCAATAAAGCTGCAGCATTGGCTgcacatgaaaaaatacataatgcAAAGAGTTGGTCAATGCCAATTGAGTGTGAATACTGTGACAAACAATTTCAAGATGCTAATCATTTAGCATCGCATCAGACTACTTGtgctaaaaaattaatgctcAATAACGGTGACAATAGTAATGGTAAATGGTCGAAGCATGCGTGTACCGAATGCGGAAAGAAATTCACGACTAAACAGAAAATGTTCAGGCATCAGTGGATTCATCGGAAAAAAACGCATTCTTGTGAAGTCTGTGGTACGCAATTTGAAAAACAGAATCAATTGGATGAGCACAGATTATCGGCACATCCTGGGGACTCTCCGTTCACTTGCACCGAGTGCGGGAAGAGTTTCGTGTCGAGACAGGGACTGTGGGAGCATGGAAGAACACATGCTGGTAGTCCAGCACATTTTCATTGTGATACGTGCTCGAAAACGTTTTCCTCGAGAcaagGATACTTGATTCATCATAGAACTCACACTGGAGAACGGCCGTACGGTTGTAAATTCTGTTGGAAGGCCTTTAGAGACGGTGGGACATTGAGGAAACACGAGAGAATACATACTGGTGAGAGGCCGCACGTTTGCCCATTATGTTCACGTGCATTTAATCAGAAAGTCGTTCTGAGAGAGCACGTGCGATGGGTTCATGCTGCTGGTAAAAATGAAACTGATGTCGTTGGACCGCCTTATCCCTGTCCTCTTTGCGGTGCATTGAATCAAGATAGAGATGAGTTGTGTGCGCATATTGTTAAGCACTCGGATCAGATGATTGCGGAAGCCAAAGCGAAGAGCAATAATAATTCTGGTAAATCGAAAGCTGTTAAGAAGAAGGGAAAGGGGAAACAGAAGAAGAATGAGGATAAGGCGAATGGTAAAGAGGGAGATACAATTTTACTTCTTGAGGGTGATAAGGATCATGATAAAGTTGATGAGGATGTTGATAATATTAATACGTTGAGAgttcattttattgatgacAAGGACAATACACTGGAGATCATTAGCAAGGATAATGAGGAATTACCGGTGCTGGCGATTTCTAATGATAATCTGCATGATGATGAATTTGTgggggaaattgagagaattgaagaggGAATTTATCAGGACAGTGATGATGAGAGGGAAATGGAGCTGATTTGTGGTATTTGTGGAGATGAATTTGGGGATAAGAATATTCTTATGGAACATGTTAAAGTGCATATTTAA
- Protein Sequence
- METSDNDQYVTYSLTSVHDIQQSIVSHEEICEPAEILATESQVVEILGERSSSDDEHEVVYPIYIKQEEAPQYTSGDDESMAVEALRQLGGMYPSYAEKKLQSLEEPPKDDGTEEKSVSYNENFNSTEDKTSQAEESSEFDSSAAERKNFGKFSCPTCSEKFERKLDLNNHLVCHQVDRPHACRTCGNLFRSKSSLQIHMSHFHNQEKTHKCTICGADFQRPSSLSNHMKIHTYVAGRALIGQTDGFAEQSSTAVQNLQNYEVTQVNWQGYTFQNEQNDLQEFAVLPNGEVAQFEYSGINQIGQTYNLNLNTFTSTDGLVKVETIPFEQRRNEFVTVEIDKAFSCNQCGATFNKAAALAAHEKIHNAKSWSMPIECEYCDKQFQDANHLASHQTTCAKKLMLNNGDNSNGKWSKHACTECGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETDVVGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKSNNNSGKSKAVKKKGKGKQKKNEDKANGKEGDTILLLEGDKDHDKVDEDVDNINTLRVHFIDDKDNTLEIISKDNEELPVLAISNDNLHDDEFVGEIERIEEGIYQDSDDEREMELICGICGDEFGDKNILMEHVKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00046436; iTF_00047456;
- 90% Identity
- -
- 80% Identity
- -