Alep002199.1
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- -
- Assembly
- GCA_963942555.1
- Location
- OZ012609.1:20943180-20946405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.022 16.0 0.1 1 20 158 177 158 178 0.96 2 12 0.0047 0.7 11.3 4.2 1 23 186 209 186 209 0.93 3 12 2.6e-06 0.00039 21.5 0.9 1 23 215 237 215 237 0.98 4 12 0.0012 0.17 13.2 0.0 3 23 349 369 347 369 0.97 5 12 0.00022 0.033 15.5 0.1 2 22 379 399 378 399 0.93 6 12 0.00022 0.032 15.5 2.7 1 20 419 438 419 441 0.92 7 12 0.0015 0.23 12.8 0.7 1 23 446 469 446 469 0.95 8 12 1e-06 0.00015 22.8 0.3 1 23 475 497 475 497 0.98 9 12 0.0017 0.25 12.7 6.3 1 23 504 526 504 526 0.98 10 12 0.00029 0.043 15.1 0.4 3 23 534 554 532 554 0.97 11 12 0.00033 0.049 14.9 0.2 1 23 560 583 560 583 0.96 12 12 1.2 1.8e+02 3.7 0.0 2 23 746 767 745 767 0.94
Sequence Information
- Coding Sequence
- atGGAAACATCCGAAAATGATCAGTATGTTACGTACTCATTGACATCTGTACACGATATACAACAGTCAATAGTATCACACGAGGAAATATGTGAGCAGGCTGAAATTTTAACGACAAATGATGCACAAGTAGTTGAGATACTTGCTGAAAAATCATCGTCTGACGATGAAAATGAAGTTTATCCAATTTACATAAAGGAGGAAGAAGCGCCTCATTATACTTCAGGTGATGACGAGTCAATGGCAGTTGAGGCACTTCGTCAATTAGGTGGAATGTATCCATCCTACACCGAAAAAAAGCTGCAAACTTACGAGGAACCCCAAAAATCTACTGCTGATACTGAAAACAAAGGAAAAAACATTAGTTACAACGATAACTTTATTAGTAGTTCCAATGACAAAACATCGCATACGGAAGAAACTGTTGTAGAATTTGAAAGTGGCGCCTCCGAGCGGAAGAATATTCGTAAATTTTCGTGTCCAACTTGTGGCGAAAAATTTGAACGTAAATTAGACTTAAACAATCATCTTGTTTGTCATCAGGTTGATCGTCCACATGCCTGCAGAACATGTGGCAATTTATTTCGTTCTAAATCAAGTCTACAAATACATATGTCGCATTTTCACAATCAGGAAAAATCCCACAAATGTACAATATGCGGTGCGGATTTCCAGCGTCCATCATCTTTGTCAAATCACATGAAGATACATACTTATGTTGCGGGTAGAGCATTGATGCAGGCAGACAATTTTACTGAACAAACGAGTACAGCAGTACAAAATCTGCAGAATTACGAAGTTACACAGGTCAATTGGCAGGGTTATACCTTTCAAAATGAGCAAAATGATCTTCAGGAATTTGCTGTTTTGCCAAATGGTGAAGTAGCACAATTTGAGTATGCAGGAATCAATCAAATTGGTCaaacttataatttaaatttaaatacatTTACTGGTAGTGATGGATTGGTTAAAGTTGAGACAATACCATTTGAACagagaagaaatgaatttgttACAGTTGAAATTGACAAGAATTTTGGATGTAGCCAGTGTGGTGCTACTTTTAATAAGGCTGGAGCACTTGCTgcacatgaaaaaatacacAGTGCCAAGAATTGGTCAATGCCAATTGAGTGCGAATACTGTGACAAACAGTTTCAGGATGCTAATCATTTGGCATCGCATCAGATTACTTGtgctaaaaaattaatgctcAATAATGGAGACAGTAGTAATGGTAAATGGTCGAAACATGCTTGTACAGAGTGTGGTAAAAAATTTACTACGAAACAGAAAATGTTTAGGCATCAGTGGATTCATAGGAAGAAAACGCACTCGTGTGAAGTTTGTGGGACGCAATTTGAAAAGCAGAATCAATTGGATGAACACAGATTGTCGGCTCATCCTGGGGATTCACCGTTCACTTGCACTGAGTGTGGGAAGAGTTTTGTGTCGAGACAGGGACTTTGGGAGCATGGCAGAACACATGCTGGGAGTCCAGCGCACTTTCATTGCGATACGTGCTCGAAAACTTTTTCGTCGAGACAAgGCTACTTGATTCATCACAGAACTCACACTGGTGAACGACCGTACGGTTGTAAATTCTGTTGGAAGGCATTCAGAGACGGTGGAACATTGCGAAAACACGAGAGAATCCATACAGGTGAAAGACCGCACGTTTGTCCCTTATGTTCACGTGCATTCAATCAAAAAGTAGTTTTGAGAGAGCACGTGAGATGGGTCCATGCTGCTGGTAAGAATGAAACACCTATAGCTGGACCCCCTTATCCATGTCCTCTTTGTGCCGCATTGCATCAAGACAGGGACGAGCTGTGCGCACATATTGTTAAGCACTCTGATCAGATGATAGCCGAGGCCAAAGCAAAGAGTAACAATAATCCTGCCAAGGCGAaagttgttaaaaaaaagggcaaggGTAAGCAGAAGAAAAACGAGGATAAAGCCAATGGAAAAGAGGCCGATACGATTTTACTGGTGACGAGCGAGAAAGATCATGTAAAAGCTGAGGAAGACGTTGCCGTTGACAATATCAATACTTTGAGAGTACATTTCATCGATGATAAAGACACTACACTAGAAATCATCAGCAAGGACAATGAGGAACTACCGGTTTTAGCTATTTCTAATGATAACGATGAATTTGCAGGGGAAATCGAGAGAATTGAAGAgggaatttatcaagacaGTGATGATGAAAGGGAAATGGAACTGATATGCGGAATTTGTGGAGATGAATTTGgagataaaaatattcttatgGAACATGTTAAGGTGCatatttaa
- Protein Sequence
- METSENDQYVTYSLTSVHDIQQSIVSHEEICEQAEILTTNDAQVVEILAEKSSSDDENEVYPIYIKEEEAPHYTSGDDESMAVEALRQLGGMYPSYTEKKLQTYEEPQKSTADTENKGKNISYNDNFISSSNDKTSHTEETVVEFESGASERKNIRKFSCPTCGEKFERKLDLNNHLVCHQVDRPHACRTCGNLFRSKSSLQIHMSHFHNQEKSHKCTICGADFQRPSSLSNHMKIHTYVAGRALMQADNFTEQTSTAVQNLQNYEVTQVNWQGYTFQNEQNDLQEFAVLPNGEVAQFEYAGINQIGQTYNLNLNTFTGSDGLVKVETIPFEQRRNEFVTVEIDKNFGCSQCGATFNKAGALAAHEKIHSAKNWSMPIECEYCDKQFQDANHLASHQITCAKKLMLNNGDSSNGKWSKHACTECGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETPIAGPPYPCPLCAALHQDRDELCAHIVKHSDQMIAEAKAKSNNNPAKAKVVKKKGKGKQKKNEDKANGKEADTILLVTSEKDHVKAEEDVAVDNINTLRVHFIDDKDTTLEIISKDNEELPVLAISNDNDEFAGEIERIEEGIYQDSDDEREMELICGICGDEFGDKNILMEHVKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048142;
- 90% Identity
- iTF_00046436;
- 80% Identity
- -