Ates014510.1
Basic Information
- Insect
- Aleiodes testaceus
- Gene Symbol
- -
- Assembly
- GCA_963565655.1
- Location
- OY751426.1:1132588-1134924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0058 0.49 11.1 0.0 1 23 344 366 344 366 0.93 2 12 0.53 45 4.9 0.3 5 21 371 387 370 388 0.92 3 12 2.7e-06 0.00023 21.6 2.1 2 23 441 462 440 462 0.97 4 12 3e-05 0.0025 18.3 0.2 1 23 468 490 468 490 0.98 5 12 0.00027 0.022 15.3 2.4 1 23 496 518 496 518 0.98 6 12 7.5e-06 0.00062 20.2 1.3 1 23 524 546 524 546 0.98 7 12 0.00052 0.044 14.4 1.3 1 23 552 574 552 574 0.98 8 12 1.5e-07 1.3e-05 25.5 0.5 1 23 582 604 582 604 0.98 9 12 0.005 0.42 11.3 0.2 1 23 610 632 610 632 0.94 10 12 7.9e-05 0.0066 17.0 3.0 1 23 638 660 638 660 0.98 11 12 2.2e-05 0.0018 18.7 0.6 1 23 666 688 666 688 0.98 12 12 0.033 2.8 8.7 2.0 1 23 694 717 694 717 0.93
Sequence Information
- Coding Sequence
- atgtcagtggttaatgaattaatttatctctgTCGATTGTGTGCAACGAAAACTGGAATATTATTGGGACTACCAATATTCGATCGTGGAGGTGATGAAAATCTCaggaatattgataaaaaaatagcagCATGTTTGCCAATTCAGGTATCAATAAACGATGAACTACCAAAAGTTGTCTGCCAAGAATGTGCATTCAAGCTGGATGAAATAATAGATTTTCGAGAGAAAGCTTTGGAGACTGAGCACCTCTTCACTGGAATGCTGAAGAGGATGAAGGACAAGATAACTCATGCATCAGAAACCTTCGAGAATGCAGTGGACGTGATTCCGGAGATGCAGAGAATAACACATGACAATATCCCTGACATAAATACCGAAATTATCCATAATAACATGGAAAAACCAGAGGATATTGAGTCACCAACGATACACACGGTGCAGGTAATAGATGAGATGGATTCTGTTGATGGGGAGCAGGTTGTTGGTGAAGGAGAAATAGAGCAGCAAGAGGACGATATCGAAGTTACCTTTATTGATTGTTTAGACGGTGATACAGTTAGAATGGTCGATGAGCACATTCGTGAAGTGGCGGATCACCAAATAGCCATGCACCTGGAGAATGATATAACAGTAGTCGGACATCATCTCGGGATAAACGACGTTGATGCAATCGGCTCTGAATCACCGAATCAAATCGTGCATTATTGTGATAATGTTAAGTATGAGACTGTTCCAGTGAAGGAGGAATATAATCAATTACACAAGAGATTGAGTGTCGAGGATGGGGGGAAGAGTATAACCCAGTCCTTTGGAGAAATTCAAGAGGATGAAAATGATGGTATTGTTGAGACACCTCTTGAAGACACGATTATTAACATTAAAGGTCAGAGTGAGAATCCCGAGGCTCCGTCGACTAGTCGGAGGAAAAATCGGGAGGTAACGACAGAATACACGAAATTCAAGAAACATAGTTTATTAGAAACAACATTGAATACTCCAACTGTCGATGAAACTGGTACAAATTGGTACATCTGTCCAATCTGCAATGAAGCAGCCACAGAACCCAGTAATCTAGCTGATCACTTTGATGAGCATTTTGTCTCGTGTACCTGTggactattttttattaatgttgatgatttaaataatcataagAAGTTTAGTTGTAAAACTAAGGTATCAGGCAAGAGGGAGAAGAATCATaaaggagagaagaataaaaatcaagtAATCAGTGAATTGTTGAATGAAGAAGATGCATTGATTActgaggataaaaaatcacAGATCAATGGTAAACAGAAATGGACACCAAAGGTTTGTTCACAATGTGGAAAACAGTATCGTACCAATTACAAGCTTCAGGAGCACATGAGGAAACACACGGGGGAGAAACCATTCCAATGTCTACTCTGTGATAAAGCTTTCCGGAGTAAAATCGGCCTTGCTCAGCATACTGCTACACACACTGGACAATTTGATTACAGCTGCTCAACTTGTGGCAAAGGTTTTCAATGCAAGAGTTATTTAATCGTTCATCAGAGGGTTCACTCGGATCTCAAGCCCTATCCCTGTAGTACTTGCGGACAAAACTTTAAAACGAAACAGTCACTCCTCGATCATCAGAACAGGCACCTCGGAGTCAAGCCTTATATGTGTGAAGTTTGTGGGAGGGGATTCATCACTAAGGGATTATGCAAGAGTCACCAGAAGATTCATTCGGGAATGGACAATCGCCAGTATCCCTGTGAAGTGTGTAATAAGATGTTTGTGAGCAAGAGTTATCTCAATACACATTTACGGATTCATACGGGGGAAAAACCGTATTTATGTGAGGTTTGTGGGAAAGGATTTTTGACGAGGGTGGACCTCAAAATCCACTCGACTATGCACACGGGGGAGAAGAGCTTCAAGTGCGAGATGTGTAATAAGGTTTTTGCGAGAAGAGCTGCTCTCAGGTGTCACAGGAGATCACACACGGGTGAACGGCCGTACAGGTGTGATGTTTGTGGTAAAACATTTACGCAATTCAGTCCAATGGCTATTCATAAACGATTACATACGGGAGAAAGACCTTATCCCTGTGATATTTGTGCAAAGGCATTTGTCTCTAGGTCAACTATGATgtgtcataaaaaaaaaaatcattcaactaCTGTCAATTCTAATCTACAAAATGACGAAGAAACTGGGGCTGATAATAACGGAATCATTGTTCGGGAGACTAAtgaaattatatcaattaCGCATTAA
- Protein Sequence
- MSVVNELIYLCRLCATKTGILLGLPIFDRGGDENLRNIDKKIAACLPIQVSINDELPKVVCQECAFKLDEIIDFREKALETEHLFTGMLKRMKDKITHASETFENAVDVIPEMQRITHDNIPDINTEIIHNNMEKPEDIESPTIHTVQVIDEMDSVDGEQVVGEGEIEQQEDDIEVTFIDCLDGDTVRMVDEHIREVADHQIAMHLENDITVVGHHLGINDVDAIGSESPNQIVHYCDNVKYETVPVKEEYNQLHKRLSVEDGGKSITQSFGEIQEDENDGIVETPLEDTIINIKGQSENPEAPSTSRRKNREVTTEYTKFKKHSLLETTLNTPTVDETGTNWYICPICNEAATEPSNLADHFDEHFVSCTCGLFFINVDDLNNHKKFSCKTKVSGKREKNHKGEKNKNQVISELLNEEDALITEDKKSQINGKQKWTPKVCSQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCDKAFRSKIGLAQHTATHTGQFDYSCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEVCGRGFITKGLCKSHQKIHSGMDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCNKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYPCDICAKAFVSRSTMMCHKKKNHSTTVNSNLQNDEETGADNNGIIVRETNEIISITH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047445; iTF_00046430;
- 90% Identity
- -
- 80% Identity
- -