Alep021175.1
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- zfh1
- Assembly
- GCA_963942555.1
- Location
- OZ012618.1:16185812-16188669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00055 0.081 14.2 2.6 1 23 30 52 30 52 0.94 2 22 1.5e-06 0.00022 22.3 1.1 1 23 58 80 58 80 0.98 3 22 6.2e-07 9.2e-05 23.5 0.1 1 23 86 108 86 108 0.98 4 22 0.00025 0.037 15.3 3.1 2 23 115 137 112 137 0.93 5 22 0.00015 0.022 16.0 5.5 1 23 142 164 142 164 0.97 6 22 2.2e-05 0.0033 18.6 1.2 1 23 173 195 173 195 0.98 7 22 5.7e-06 0.00085 20.5 1.0 1 23 201 223 201 223 0.97 8 22 0.00014 0.021 16.1 2.0 3 23 231 251 229 251 0.97 9 22 1.1e-05 0.0016 19.6 6.0 1 23 257 279 257 279 0.98 10 22 2e-06 0.0003 21.9 0.2 1 23 285 307 285 307 0.98 11 22 0.0046 0.69 11.3 0.0 1 22 391 412 391 415 0.91 12 22 2e-05 0.0029 18.8 1.2 3 23 424 444 423 444 0.97 13 22 2.8e-06 0.00042 21.4 4.7 2 23 467 488 466 488 0.97 14 22 0.00024 0.036 15.4 4.8 2 23 494 515 493 515 0.97 15 22 0.00054 0.08 14.3 0.2 1 23 520 542 520 542 0.98 16 22 1.6e-05 0.0024 19.0 4.1 1 23 550 572 550 572 0.98 17 22 0.095 14 7.2 2.5 1 23 578 601 578 601 0.94 18 22 0.0002 0.03 15.6 0.3 3 23 614 634 612 634 0.96 19 22 5.7e-06 0.00085 20.5 2.0 1 23 640 662 640 662 0.96 20 22 2.9e-08 4.4e-06 27.7 0.2 1 23 668 690 668 690 0.98 21 22 2.3e-07 3.4e-05 24.9 0.9 1 23 696 718 696 718 0.98 22 22 0.00035 0.052 14.8 0.9 1 22 724 745 724 745 0.97
Sequence Information
- Coding Sequence
- atgaaaagGCTTGCCCAGTTAAAAAACTCGTCAGAAGCCACATCAACATGCTCCTCCTCATCCCCATCACCATCACCGCCACATACATACGAGTGTAAAATATGccataaatatttcaaatcaaAGAATCTTTTTGAAGGACATCAGGTAGCACACAGTGATGCACGTCCCTACAATTGTGACACATGTGGAAAATCATTCAAACGTACTAATACACTAGCAGTACATCGTAGAATTCACACACGTGAACGTAATTTTGTTTGCGATGTGTGTGGCCGTGCGTTTGTTCAGGCATCACAGCTTGGTACCCATCAGAGACGTCACTTTGAGAAATACACGTGCTACTGTGAACAATGTGGAAAGGGTTTTTTTACAAAAGCTGAATTACATGGTCACATGAATATAAAGCATGGCGCTAAAGAACACGTTTGTCATTCCTGTGATAAATCATTTCCAAATAATCATACTTTAGCACGTCACTCAAAAATTCACGATCCAAACTTCAAACCAATCAAGCATCAGTGTGAATTTTGTGGTAAAATATTTGcatacaaaaattcattggtGGTACACGTTAAATCACACACTGGGGAGAATAAGTTCGATTGCCATTTGTGTGGCAAATCAGTATCATCACGTGGATCACTGCAGGATCATTTGAGATTACATGGTggtgaaaaatcattattttgtgATGTCTGCGGCAAGGCATTTCACAAAAGAACAACTCTAGTTGTTCACAAACGCACACACACTGGAGAAAAACCATACACCTGTGATAATTGTGGGAAATGTTTTACTCAACACTCGACACTTGTTATACATAAACGTTATCATACTGGACAAAGACCTTATCAGTGTGGTTATTGTGAGAAAAGTTTTGTATCGAGAGCATTACTTAATGCACATGCCAAAGTGCACGATAAAGAGAAACTTAAACAAGAGAAAACTTTTAATTCCCTGGAAGAGACCTTTAAGAGCAAATTAGTTGAAGAAGATCCCTTAATATTTACAGGACCAATCCCCAGataTCTCGAGTCTCTCAATTCTACAAGCTGGATGGCACATGGAACTAGTTCAACTCAAAAATCCTCAAAGCTTTCAATCGACAGGGATGAAATCCCTGTCAAGTCTGAGGAGTTACAAAATCAAGAGGACATGCCACTGGCATATTACTGCAAGCTCTGTGCTCTCTTCTTTCCATCTGAGGATCAATTGGAAATTCACATAATGGAGCCACCTCACAAGCCAGCGAGGCGAAAAAATATCTGCGAGTCGTGTGGACGAGTTTTTCGTACCATGATGTCCTTGAGAAAACACATGAAGAACCATTTACCACAGAAATCAAAAGCAAAGCCTCAAAATACGCGGCGAGAAAGAGATGAGGGCGGCGAATTAGAGTGTGAAAcatgtaaaaaaacatttcgCCACAAGAGTAATTATCAAAAGCACATTTTACGCCACGTAACTGGTGATTTAACATGCAAACATTGTCCCAAGAAATTTCGCCTTTTTCGGGATCTCACGAGACACgagaaaactcattttttcccgAGCTACAGATGCAAAGAGTGTGATTATGAGACAACTGTTTTAGCAGCACTCAGTATTCACATGTCAAGGCATACTGACAAAGCTGATCTTCCATTCAAGTGCCATGAGTGTGATAAACATTTTCGTAAAGCAATTGATCTCCAAGAACACTATAATATACACTCGGGTGATAAACCATTTGTTTGCCAAAATTGTGGTAGTGCATTTTATTTACGGCGGCAATTATCAGCTCACTGTAGAAGAAATCATCCCGAGATGAAAGCTAATAAAGTAACGAGCACGGCTTGTGATATTTGTGGTCGAGTATTAGCAACAAAACGCTCACTATTCAGACACAAGGAGAGTCACAATCCTACGAAATTGTATCTTTGTGACTTTTGCGGTAAAAGTTTGAGCTCGGCTGAACATCTCAAGAAGCATCGGAGAATTCATACTGGTGAAAAACCATATGTTTGTGATATTTGTGGTAAAGGATTCACCGATTCGGAGAATCTTAGGATGCACAGGCGAGTACACACTGGTGAAAAGCCATACAAGTGTGATCAGTGTCCAAAGGCATTTTCACAGAGAAGTACATTAACGATTCATAGAAGAGGACACACTGGGGAACGTCCTTACGTTTGTCAAATTTGTCAGAGAGGATTTTCTTGCCAGGGAAATCTCACTGCCCATCAGAAGACAACTTGCGTTTAG
- Protein Sequence
- MKRLAQLKNSSEATSTCSSSSPSPSPPHTYECKICHKYFKSKNLFEGHQVAHSDARPYNCDTCGKSFKRTNTLAVHRRIHTRERNFVCDVCGRAFVQASQLGTHQRRHFEKYTCYCEQCGKGFFTKAELHGHMNIKHGAKEHVCHSCDKSFPNNHTLARHSKIHDPNFKPIKHQCEFCGKIFAYKNSLVVHVKSHTGENKFDCHLCGKSVSSRGSLQDHLRLHGGEKSLFCDVCGKAFHKRTTLVVHKRTHTGEKPYTCDNCGKCFTQHSTLVIHKRYHTGQRPYQCGYCEKSFVSRALLNAHAKVHDKEKLKQEKTFNSLEETFKSKLVEEDPLIFTGPIPRYLESLNSTSWMAHGTSSTQKSSKLSIDRDEIPVKSEELQNQEDMPLAYYCKLCALFFPSEDQLEIHIMEPPHKPARRKNICESCGRVFRTMMSLRKHMKNHLPQKSKAKPQNTRRERDEGGELECETCKKTFRHKSNYQKHILRHVTGDLTCKHCPKKFRLFRDLTRHEKTHFFPSYRCKECDYETTVLAALSIHMSRHTDKADLPFKCHECDKHFRKAIDLQEHYNIHSGDKPFVCQNCGSAFYLRRQLSAHCRRNHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICQRGFSCQGNLTAHQKTTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00046413;
- 90% Identity
- iTF_00046413;
- 80% Identity
- -