Aalt022419.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- zfh1
- Assembly
- GCA_963921955.1
- Location
- OY998113.1:143909-146621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00054 0.07 14.2 2.6 1 23 41 63 41 63 0.94 2 22 1.5e-06 0.00019 22.3 1.1 1 23 69 91 69 91 0.98 3 22 6.2e-07 7.9e-05 23.5 0.1 1 23 97 119 97 119 0.98 4 22 0.00025 0.032 15.3 3.1 2 23 126 148 123 148 0.93 5 22 9.2e-05 0.012 16.7 6.0 1 23 153 175 153 175 0.97 6 22 2.2e-05 0.0028 18.6 1.2 1 23 184 206 184 206 0.98 7 22 5.7e-06 0.00073 20.5 1.0 1 23 212 234 212 234 0.97 8 22 0.00014 0.018 16.1 2.0 3 23 242 262 240 262 0.97 9 22 1e-05 0.0013 19.6 6.0 1 23 268 290 268 290 0.98 10 22 2e-06 0.00026 21.9 0.2 1 23 296 318 296 318 0.98 11 22 0.0046 0.59 11.3 0.0 1 22 387 408 387 411 0.91 12 22 1.9e-05 0.0025 18.8 1.2 3 23 420 440 419 440 0.97 13 22 2.8e-06 0.00036 21.4 4.7 2 23 463 484 462 484 0.97 14 22 0.00024 0.031 15.4 4.8 2 23 490 511 489 511 0.97 15 22 0.00053 0.068 14.3 0.2 1 23 516 538 516 538 0.98 16 22 3.2e-06 0.00041 21.3 2.4 1 23 546 568 546 568 0.98 17 22 0.095 12 7.2 2.5 1 23 574 597 574 597 0.94 18 22 0.0002 0.025 15.6 0.3 3 23 610 630 608 630 0.96 19 22 5.6e-06 0.00073 20.5 2.0 1 23 636 658 636 658 0.96 20 22 2.9e-08 3.7e-06 27.7 0.2 1 23 664 686 664 686 0.98 21 22 2.3e-07 2.9e-05 24.9 0.9 1 23 692 714 692 714 0.98 22 22 0.00035 0.045 14.8 0.9 1 22 720 741 720 741 0.97
Sequence Information
- Coding Sequence
- ATGTTTTGTTCTTTAAAATTAAGTGTGAACGAGTTGACAGGGCTCGCCCAGTTAGAAAACTCATCAGCAGCCACATCAACTAGCTCCTCCTCATCCCCATCACCATCACCGCCGCATACATACGAGTGTAAAATATGccataaatattttaaatcaAAGAATCTTTTTGAAGGACATCAGGTAGCACATAGTGATGCACGTCCCTACAATTGTGACACATGTGGAAAATCATTCAAACGTACTAATACACTAGCAGTACATCGTAGAATTCACACACGTGAACGTAATTTCGTTTGCGATGTATGTGGCCGTGCGTTCGTTCAGGCATCACAGCTTGGTACCCATCAGAGACGTCACTTTGAGAAATACACGTGCTACTGTGAACAATGTGGAAAAGGTTTTTTTACAAAAGCTGAATTACATGGTCACATGAATATAAAGCATGGCGCTAAAGAACACGTTTGTCATTTCTGTGATAAATCGTTTCCAAATAATCATACTCTAGCACGTCACTCAAAAATTCACGATCCAAACTTCAAACCAATCAAGCATCAGTGTGAATTTTGTGGTAAAATATTTgcatataaaaattcattggtaGTACACGTTAAATCACACACTGGGGAGAATAAGTTCGATTGCCATTTGTGTGGTAAATCAGTATCATCACGTGGATCACTCCAGGATCATTTAAGATTACATGgtggtgaaaaatcattattttgtgaTGTCTGCGGCAAGGCATTTCACAAAAGAACAACTCTAGTTGTTCATAAACGCACACACACTGGAGAAAAACCATACACCTGTGATAATTGTGGAAAATGTTTCACTCAACACTCTACACTTGTTATACATAAACGTTATCATACTGGACAGAGACCTTATCAGTGTGGTTATTGTGAGAAAAGTTTTGTATCCAGAGCATTACTTAATGCACATGCCAAAGTTCACGAGACCTTTAAGAGCAAATTAGTTGAAGAAGATCCCTTAATATTTACAGGACCAATCCCCAGataTCTCGAGTCTCTCAGTTCTACAACCTGGATGGCACATGGAACTAGTTCAACTCAAAAATCCTCAAAGCTTTCAATCAACAGGAATGAAATCCCTCCCAAGTCTGAGGAGTTACAAAATCAAGAGGACATGCCACTGGCATACTACTGCAAGCTCTGTGCTCTCTTCTTTCCATCTGAGGATCAATTGGAAATTCACATAATGGAGCCACCTCACAAGCCAGCGAGACGGAAAAATATCTGCGAGTCATGTGGAAGAGTTTTTCGTACTATGATGTCCTTGAGAAAACACATGAAGAATCATTTACCACAAAAATCAAAAGCAAAGCCTCAAAATACACGGCGAGAAAGAGATGAGGGCGGCGAATTAGAGTGTGAAAcatgtaaaaaaacatttcgcCACAAGAGTAATTATCAAAAGCACATTCTACGCCACGTAACTGGTGATTTAACATGCAAACATTGTCCCAAGAAATTTCGCCTCTTTCGGGATCTCACGAGACacgaaaaaactcattttttcccgAGCTACAGATGCAAAGAGTGTGATTATGAGACAACTGTTTTAGCAGCACTCAGTATTCACATGTCGAGGCATACTGACAAAGCTGATCTTCCATTCAAGTGCCATGAGTGTGATAAACGTTTTCGTAAAGCAATTGATCTCCAGGAACACTATAATATACATTCGGGTGATAAACCATTTGTTTGCCAAAATTGTGGTAGTGCATTTTATTTACGGCGACAATTATCAGCTCACTGTAGAAGAAATCATCCCGAGATGAGAGCTAATAAAGTAACGACCACAGCTTGTGATATTTGTGGTAGAGTGTTAGCAACAAAACGCTCACTCTTTAGACACAAGGAGAGTCACAATCCTACGAAATTGTATCTTTGTGATTTTTGTGGTAAAAGTTTGAGCTCAGCTGAACATCTCAAGAAGCATCGGAGAATTCATACTGGTGAAAAGCCATATGTTTGTGATATTTGTGGTAAAGGATTCACCGATTCGGAGAATCTGAGGATGCACAGGAGAGTACACACTGGTGAAAAGCCATACAAGTGTGATCAGTGTCCAAAGGCATTTTCACAGAGAAGTACATTAACGATTCATAGAAGAGGACACACTGGGGAACGCCCTTACGTTTGTCAAATTTGTCAGAGAGGATTTTCTTGCCAGGGAAATCTCACTGCTCATCAGAAAACAACTTGCGTATAg
- Protein Sequence
- MFCSLKLSVNELTGLAQLENSSAATSTSSSSSPSPSPPHTYECKICHKYFKSKNLFEGHQVAHSDARPYNCDTCGKSFKRTNTLAVHRRIHTRERNFVCDVCGRAFVQASQLGTHQRRHFEKYTCYCEQCGKGFFTKAELHGHMNIKHGAKEHVCHFCDKSFPNNHTLARHSKIHDPNFKPIKHQCEFCGKIFAYKNSLVVHVKSHTGENKFDCHLCGKSVSSRGSLQDHLRLHGGEKSLFCDVCGKAFHKRTTLVVHKRTHTGEKPYTCDNCGKCFTQHSTLVIHKRYHTGQRPYQCGYCEKSFVSRALLNAHAKVHETFKSKLVEEDPLIFTGPIPRYLESLSSTTWMAHGTSSTQKSSKLSINRNEIPPKSEELQNQEDMPLAYYCKLCALFFPSEDQLEIHIMEPPHKPARRKNICESCGRVFRTMMSLRKHMKNHLPQKSKAKPQNTRRERDEGGELECETCKKTFRHKSNYQKHILRHVTGDLTCKHCPKKFRLFRDLTRHEKTHFFPSYRCKECDYETTVLAALSIHMSRHTDKADLPFKCHECDKRFRKAIDLQEHYNIHSGDKPFVCQNCGSAFYLRRQLSAHCRRNHPEMRANKVTTTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICQRGFSCQGNLTAHQKTTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047430;
- 90% Identity
- iTF_00047430;
- 80% Identity
- -