Aalt003933.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- Prdm15
- Assembly
- GCA_963921955.1
- Location
- OY998098.1:15493894-15497794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.031 15.3 2.4 3 23 279 300 278 300 0.94 2 13 2.4e-06 0.00031 21.7 0.5 3 23 448 468 446 468 0.97 3 13 0.0094 1.2 10.4 0.1 1 21 472 492 472 493 0.93 4 13 2.6e-06 0.00034 21.5 2.8 1 23 501 523 501 523 0.98 5 13 0.0087 1.1 10.5 1.9 3 20 529 546 528 547 0.94 6 13 0.00018 0.023 15.8 5.6 1 23 552 574 552 574 0.96 7 13 0.00084 0.11 13.6 0.4 2 23 595 616 594 616 0.96 8 13 0.00077 0.099 13.8 2.5 1 23 621 643 621 643 0.98 9 13 0.0012 0.15 13.2 0.1 2 23 649 670 648 670 0.95 10 13 0.00047 0.06 14.4 6.4 1 23 675 698 675 698 0.96 11 13 0.00027 0.035 15.2 0.9 1 23 704 726 704 726 0.97 12 13 0.00011 0.014 16.5 5.3 1 23 732 755 732 755 0.98 13 13 0.04 5.2 8.4 6.3 1 23 760 783 760 783 0.95
Sequence Information
- Coding Sequence
- ATGCCACCACTGAAGAAAACaatgataacaataataaaCGAGAAAGTGAATGAGAATGAGGAAAGAAATGAGACAGACAATTATTTAGCAGcTTGTAATATCTGTGGACAGGTCCATGATACTCATGACTGTCCATTTCTCCTCGATCTTCAATACGTCCCAGACACTCCACTGTTATCAAAAGCCCGTCAAACTCTCCCAAAGGACCTCGAGATAACAAAAATGGCAGATGGAAGTACAAGTATACTAACAAAACGTGAATTTCCCCGAGGCACAACATTTGGTCCATTCGAGGCAAAGAGAAACTGGACAATGAATCCAATGACAAACTTCCCAATAAGAATATTCGGTTCAACCCCAAAGGAAACGTACCACCTAGACTACTCAAACGAGGACACGAGCAACTGGATGTGTTTTATCGCCCCAGCATCATCCGCAAAAGAGCAGAATTTGATCTGTTATCAAGTGAAAAACAACATTTTTTATACAGCAATGCGTAAAATCCCAATTGGCGAGGAGTTGCGCGTCTGGTACGCGCCTTTTTACgctttaaaaatgaaaatgccaCTCTACAACATCGATTTCGCCACAGTGAGCCCATCTCTCCCAATAAAAGATCCCCAATCATCTGCaacagatgaaaaaaacgagcagatcgaattattgaataaGGACATTGCCCAAGAACTCGCAGAACGTCTTCCAGCCCAGAAATTAGGTGCAAAAGACGATAAAGCCAACTGGAACTGCAAATTATGCTCATCAACAATAAATTCAGTGCCATCTTACGCTAAACACCTGATGGACCACTACAAAACGCTTTTAGGTGCATTTTGCAATATTTGcaacagaaaattttacaatttgaGTTTACTTCAGAAGCACAAAAACGAGAAGCATCCAGACAATGAGGCCATTGGAATACCAACTAGTGACAGCAATAAACAGGAAAATGCGCAGATGATCCTCTTGAATATGAGCGAAACTGATGGACAAACGTCTGACGCAATGAGCGAAATTCTAGACAAATTGAAAAGTGGTAAACCCATAAATGAGTCGAGTatcaaggaaaaaatcactgaTTTACAATTATTGGACACGAACTCGATAAATGTCAGTGATCTTCTTCAGAACAACGGAAATCTAATTGAAAACTCGTCTCTCAAGTCAATTCTCGAGAATCAATGCCTCAACATGAATCTGAGCACAATAACAGATTCAATActctctgaaaatatttcatcggATCAAGTGAAGTTCAATGTTGAAGAATTAACATCTGATCTATTGGACATGACAAATGACAACGACACTTTATCTCAGAGAATTGACAATCTTGACTGCGACATTTgcggtaaaaaattcgataaaccCGAGTACTTGTATCGACATTTGCGTAAACATACAGGTGAATTTATTTGTCCATCATGTTTAGCTGTTTTTGCGAGAAAAGAGAATTTAGTATCTCACGTTTGCTCGTACATGAAGAAGAACGATACATTCGAGTGTCCCTATTGTCAGAAACAATTTACAGTGAAAAAGTACTTGAAGAGACACATAACAAGACACTCGGACAACAATAATTGTAAATGGtgcagaaaattattttcatcatcgaGTGAATTAGAAGCGCACAAGTGTCCAGCACCACGTCACATTTGTGCTCAATGTGGTCGAAGATTTGTTCATCGTGCTCATCTCAATCGTCACACAAAGCTGCACACCAATCCAAAACCCGTTATCAAGAAGATCCGGAAGAAGAGCAACGAGGAAAAGCCTCTTATCTGCGAAAAATGCGGAGATTCATTTAAAACGCCTTATATCTTGAAACAGCACTTGAGATCACATGGAGAGAGAACTTTCGAGTGCGATATTTGCAATAGGAGGTTTCACAGGATAAGTGTTCTGAAGCAGCACAAGCAGATCCATCAAAATGCTCAAATTCCTTGCAGTATCTGTGGGAAGAAGCTCAAGTCGAAAAAAGCACTGGATGTCCATGTACTGCTGCATGGAAACAAGAAGTTCCAGTGTGAAAAGTGCGACAAGAGCTTTTTCCAACGCTGCAATTATCTCAAGCACTACAAGCAGATTCATGGGGAGAAGATCATgtacaagtgccagaattgtCCAACACAATTCACCAGCGAAGCTTCTTACAATAAACACGTGGACAGCCACATGAAACCTGCAGAATACTCTTGTTCTCAGTGCCAGAAGACTTTTCATGGACAGTACCAATTGAAGAGGCACACGCAAACTAGCCACTCTGGCATCATTTATCGGTGTCCTTACTGCAAAATGACAGCGAGACATAGACACAGTATGAGGAGACACTTTGAGAGACAGCACAAGAGTCTCAGTGATGAGTGGGATCGTCCGGGTTTTGTTAATGGCTTGGAGGAGAGAATGGTCCAGGATAAGGCAGATTTTGGGGCTTCTGGGAgtaggggggaggggggaatgGGTCCTCTGGAGGGGGGAGAAGGTACTGCGGCTTTTGTGGGGGTGGGGGGTGATGGTGATGTAGGTGGGGTTGGTGATGGGGGTGCTGGTGAGGggaaaggggagggggaggtgATGCTGCAGGGGAGTGAGGCGCAAAGGGATGCTGCAGATGAACTGCAGATTAATGATGTACCGCAATTAAGTATTAGTGATTCTGATACGCAGCTTGCGGAATCGGTACTTGGGAATGCCTATATTTTTGGGGAGGATGGGGGCGACATCATGTTTTATGTTCTTGATAATGGACCGGTTATCACGGAGTATTAG
- Protein Sequence
- MPPLKKTMITIINEKVNENEERNETDNYLAACNICGQVHDTHDCPFLLDLQYVPDTPLLSKARQTLPKDLEITKMADGSTSILTKREFPRGTTFGPFEAKRNWTMNPMTNFPIRIFGSTPKETYHLDYSNEDTSNWMCFIAPASSAKEQNLICYQVKNNIFYTAMRKIPIGEELRVWYAPFYALKMKMPLYNIDFATVSPSLPIKDPQSSATDEKNEQIELLNKDIAQELAERLPAQKLGAKDDKANWNCKLCSSTINSVPSYAKHLMDHYKTLLGAFCNICNRKFYNLSLLQKHKNEKHPDNEAIGIPTSDSNKQENAQMILLNMSETDGQTSDAMSEILDKLKSGKPINESSIKEKITDLQLLDTNSINVSDLLQNNGNLIENSSLKSILENQCLNMNLSTITDSILSENISSDQVKFNVEELTSDLLDMTNDNDTLSQRIDNLDCDICGKKFDKPEYLYRHLRKHTGEFICPSCLAVFARKENLVSHVCSYMKKNDTFECPYCQKQFTVKKYLKRHITRHSDNNNCKWCRKLFSSSSELEAHKCPAPRHICAQCGRRFVHRAHLNRHTKLHTNPKPVIKKIRKKSNEEKPLICEKCGDSFKTPYILKQHLRSHGERTFECDICNRRFHRISVLKQHKQIHQNAQIPCSICGKKLKSKKALDVHVLLHGNKKFQCEKCDKSFFQRCNYLKHYKQIHGEKIMYKCQNCPTQFTSEASYNKHVDSHMKPAEYSCSQCQKTFHGQYQLKRHTQTSHSGIIYRCPYCKMTARHRHSMRRHFERQHKSLSDEWDRPGFVNGLEERMVQDKADFGASGSRGEGGMGPLEGGEGTAAFVGVGGDGDVGGVGDGGAGEGKGEGEVMLQGSEAQRDAADELQINDVPQLSISDSDTQLAESVLGNAYIFGEDGGDIMFYVLDNGPVITEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047465; iTF_00048157;
- 90% Identity
- iTF_00047465;
- 80% Identity
- -