Aalt011239.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- gtf3a
- Assembly
- GCA_963921955.1
- Location
- OY998104.1:1219386-1223969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.012 1.5 10.0 0.2 3 23 681 701 679 701 0.96 2 17 0.014 1.7 9.9 0.7 1 19 707 725 707 728 0.92 3 17 0.37 47 5.3 1.3 2 23 734 755 733 755 0.96 4 17 7.3e-05 0.0094 17.0 1.2 3 23 764 785 763 785 0.98 5 17 0.0034 0.44 11.7 2.1 1 23 792 815 792 815 0.95 6 17 8.4e-05 0.011 16.8 0.7 1 23 821 844 821 844 0.94 7 17 0.57 73 4.7 0.9 2 23 852 872 852 872 0.94 8 17 1.2e-07 1.6e-05 25.7 2.1 2 23 878 899 877 899 0.97 9 17 2e-06 0.00026 21.9 0.2 1 23 905 927 905 927 0.99 10 17 0.0038 0.49 11.6 2.8 2 23 939 961 938 961 0.95 11 17 0.4 52 5.2 2.6 1 23 967 990 967 990 0.92 12 17 0.0011 0.15 13.2 2.8 2 23 1012 1034 1011 1034 0.95 13 17 0.0011 0.15 13.2 0.8 2 23 1041 1063 1040 1063 0.96 14 17 3.6e-05 0.0046 18.0 1.7 2 23 1071 1092 1070 1092 0.97 15 17 0.0011 0.14 13.3 2.3 1 23 1098 1121 1098 1121 0.96 16 17 0.29 37 5.7 3.2 2 23 1128 1149 1127 1149 0.96 17 17 0.16 21 6.5 2.2 1 23 1155 1177 1155 1177 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAACAAACTGAGactataatattttttgatgattattcaGAGGGAAATGTCGAGAATTCTGGGCAAGAGACAGCTGAGAAAAGTGGAGTTTATACGTATGATGATAATGCagaacattttgatgataaagACGAGGAAAAGAGTGGGAAATGTTTGGAAACCTCAGAAACTGATGTTCAAGATGTCCATGAGAACATGATGTACACCTACAAACAGCTGCCTTCTGTCTCTTCGCCTTCGCCACCTCCAATAAAAGACCACAACTACAGCGAATCATCTCCCAGCACTTCAAAACCCGAAAAAACCGGCCAGACTCAAGTAAAAACGATAAACGActtgaaaaaagtaatttcaaaAGTGAAGTTCCTCCCTCCGGAAGTCGACACGTTGAAAGAACTCTCAAAATTATCgcaatcttcaaaaaatccccaaaaatcaaAGCTAGACGATTACTGTCGCACATGTGCGGGTCTAAAAATCCCTTTAGTCGATATTTTCGGGGAAAAAGGCATTCAAATGCGTTTGATCCAGCAAATGAAGCACTTGGAGGACATCGACGAGCACGATGGCCTCTCTACGCAAATGTGCATGGACTGTATCTGCGACTTGAAGATGAGTTACAAGTTTTTCATGCAGATAAAAAAAGCGCAGATCAAGCTAAAGTCCTTGTTAACCGTCTCTACAAACGAAGAAAAAGCGCGCGCCTTTTCTGCACCAGAGAGTCCAAAGAAAAAGGCGGGAGATTCCATATCCGCATCGACCCCACCCCCTCTCGCAGCTTTTGAGGCTGCAGAAAGTGTTTCCACCCCGGTTTTCCCTCAGGAAACGATTCCGGAGCCTCTGGAGGAGCTCAGCGAGAGCGAATCCATCGAGGAATTCGATCCCGACGATGcgcccccttccccctccccttcgGATAACGATGACtccgaaaaaaagggggatgaCACCGACAATTCCCCAAAACCCGAAGAACTTCCTTCGATTAACGAAGAAACATCTCAACCTGTTGATCAATTCGACTCTTTGAGCGATTTCCCGGAGATCAAGGCTAGAGATCCTTCTTCGGAGAATCGAGAGGAGTCTGAGGACATGTCGGACTCTTCAAAATCCTCGGCATTGAAGCGAAAGGCCCCTCCAGCCTCCCAAAGAGAGTCCTCGGACTCCCAAGAACTCCCAGAATCCTCGAAATCTCCGATAAAATCAGCGAAAGACCCGAAGATTCAGAAACTAGTGCAGAATCCGTTGAACATTTCTCCTTCGAATGAGGATGGGATAATGTATGTTACAGTAAAGGGGTCAAAACCGAACGAACTTCTTCTGGTGAAGGTCAAGAAGATGGAGAAAAACGATAAAAAGGAGGAAGTTAAGCCGTTGATAAAGAAGCCTTTGGATCTAAAGCCTTTGAAGTCTGTGGAAAAGGCGCTGAAGTCTTTGCCGATGATCCTCAAGCATCCGGAGCCGCCTAAGAAGATGGACTGCAGAGGGGCAATAATCGAACAGCAGATAGAGCAGTacaagaagaaaagagaacaGATTCTCGGGGGTTCGGTTGGACTCCCAAATGCCCTGAAATTTGAGGACGGAGCGGTCAGATTCGTAAATCCTGTTCAGAGTCTCTCCGAAGACGACCTGAAACAGGATCATTCAAGTGACGACTTCGACGACCAAAAACTAAAGATGGGATCAAGTATAATTCCATCTTCAAACATAAGTACAAAGGAATATTTAGCTAGATTATCGAGAATAAAGCAGAAATGGGAGGAAgctaagaagaagaaggaagcTCTTCAGCAGCAGCTGGAGGAGTGTGGTGAAGGTAATACCGATAAGTTAACTCGAATACTAGGGGAAAAGGAGAAGAACATCCAAGAGTTTCAGGAGTACCTAAAACAGCGGAAAATAGTGATAACGAAATTGAAGGACGAGGACATCATTTCCCTGTATGAGGAGAGAAACGTGACGAAAAAATTTCCGGATCTAATTGACGAGAATATTCCATTTGACGGGTTGTTAGACGCTGATTTTCTGGACTGTGACTACTGCATCCAGACGTTCTCATCTCGAGATGTTCTGGAAGAGCACTTGAAGTCCCACGACTACAAGATTTTCTACTTCTGCGAGGACTGTGGCCACGAATTTTCAACGAACAAGGCAAAAAGAGCGCACAATGTCACGTGCCTGAAGAAACTAGTCTGTAAATACTGCGATTTTATGCTAGAATCCAAAGGCAAAAAGCGCCAGCACGAGCAGAAGCATTGTGACGCAATGTACGGACAGTTATGTGACGTCTGTGGCGAGAAATTCAAGCACCAGGGAACACTGGACCAGCACATAAAAACGCAGCACATGAGCTGGGAAAAGATCTTCCAGTGTCCAAAGTGTCCTAAAAAGTTTGCATTCAAGCAGAAATTGAGTTTCCATTTGAAATCCGTACATACGACGATGCGAGCCTATTTGTGTGAGGATTGTGGTGCTGATTTCAAGAATCCGGCGTCTTTGAGACACCACAGGATCAGGAAACATCAGCCTACTGGTAATAAGCGAGAATGTCCAGTCTGCCACAAACTGGTGCCTTTCTACAGTTTATCGAAGCACATGTACACGCACAAAGCCTACACGATCCAATGTCCGCACTGCGATAAGATGTTCAAGAACTCTTCTACTTTGAAGCAACATGTGAGGATTCATGAGGACCAACGGCAGTACCGCTGCGACACTTGTGGCGTTGGTTTCAACAGGAGAGATGGCTTAAGACTCCACATGCGGGTCCATCAGAAGAGCGACAGCCGAGCCTTGAAGGAGTGCTCCTGCCAAATCTGCTCGGAGAAGTTCCCGAATCACTCGATGCTAGTGATCCATAGAAACCGGGTTCACAAAGACGGGAAACAGTACACGTGCCACATCTGCAACAGGTCCATGCTCTCCACGAGATCCTTAGAATGGCACATGTCTCATATTCACAACGAAAGTGCACCGGGACTCAACAAAGAGGACGCCGACAACTCGAGCGAGAAGAAGCGGGTCACGTGTAATCATTGTGATAAGACTTTTAAGACGGAGATGATCCTTAGGACTCATATAAAGAACACCCATATGGAGAAGAATCCGGTCAAGTGCTTAGATTGCGAGGCGACGTTTACGTCTGAGGTGAGACTCCGGCATCACATGATGGTGACGCACAACAGGCTGGAGGGAACGTTGACCTGTCCTCATTGTCCGAAGAGGTTCGTCAATCAGCTCAGACTTAAGACCCACATGATTTCCCATTCTGAGGACAGACCTTATACTTGCGAGATCTGTGGGTTCAATTTGAAGACGAAGATCCAGCTGATCAAGCATCATCAGAACAGGCACAGTGATGAGAGGCCTCTGCAGTGCAGGTACTGTCCTTGGAGGTGTAAACAAGTCAGTGCTCTTGTCTGTCATGAGAGGACGCACACCAATGAGCGACCGTACACGTGCATAGTCTGCAAGCAGAGGTTCAAGTATCTGGGAGACAAGAACAAGCACGAGAGGAGACACGAGAGTCTTGGGGGCCAGGGCTTCAAGAGGCTTGTTACAGGGAGACATGTCAAGGAGAAGGAGCGAGAGGAGGGCGAGACCTCGGAGGAGCAGGAACAGTATGAGGAGGTCGAGAGGGAGCTGGAAGAGCAGTATGAAGGAGTTGAGGAGTTTGATGCTACTGAGCAGATTGTTAAGTTTGAACCGCAGGAGATTGATGGAGAATACGAGCAGGACTATCAGCAGgaatATCAAGAAACCTCGAGAGAAGCCTCGGAAGCTGCAGAAGTGATAATGCACATGGAAGATGCAACAGTATACACGGAAGAAGTTACAGCTGATAATATTGAAGCAGCAGAAATGATAACTGACGAGATAATGACGAGTCAGATACTTCAAGCTGGAACAGTTGTTCATCTTCAGCAGCAGGGTGATGATGGTAAAATTCAGGTGATACCTGTTATGCTGTCGTTACCAGATTTAACTGATGGTGGAGGCGAGGTGAACCTTGCTACTGCATCAATCATGTATAATAactga
- Protein Sequence
- MSEQTETIIFFDDYSEGNVENSGQETAEKSGVYTYDDNAEHFDDKDEEKSGKCLETSETDVQDVHENMMYTYKQLPSVSSPSPPPIKDHNYSESSPSTSKPEKTGQTQVKTINDLKKVISKVKFLPPEVDTLKELSKLSQSSKNPQKSKLDDYCRTCAGLKIPLVDIFGEKGIQMRLIQQMKHLEDIDEHDGLSTQMCMDCICDLKMSYKFFMQIKKAQIKLKSLLTVSTNEEKARAFSAPESPKKKAGDSISASTPPPLAAFEAAESVSTPVFPQETIPEPLEELSESESIEEFDPDDAPPSPSPSDNDDSEKKGDDTDNSPKPEELPSINEETSQPVDQFDSLSDFPEIKARDPSSENREESEDMSDSSKSSALKRKAPPASQRESSDSQELPESSKSPIKSAKDPKIQKLVQNPLNISPSNEDGIMYVTVKGSKPNELLLVKVKKMEKNDKKEEVKPLIKKPLDLKPLKSVEKALKSLPMILKHPEPPKKMDCRGAIIEQQIEQYKKKREQILGGSVGLPNALKFEDGAVRFVNPVQSLSEDDLKQDHSSDDFDDQKLKMGSSIIPSSNISTKEYLARLSRIKQKWEEAKKKKEALQQQLEECGEGNTDKLTRILGEKEKNIQEFQEYLKQRKIVITKLKDEDIISLYEERNVTKKFPDLIDENIPFDGLLDADFLDCDYCIQTFSSRDVLEEHLKSHDYKIFYFCEDCGHEFSTNKAKRAHNVTCLKKLVCKYCDFMLESKGKKRQHEQKHCDAMYGQLCDVCGEKFKHQGTLDQHIKTQHMSWEKIFQCPKCPKKFAFKQKLSFHLKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCHKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKSDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCHICNRSMLSTRSLEWHMSHIHNESAPGLNKEDADNSSEKKRVTCNHCDKTFKTEMILRTHIKNTHMEKNPVKCLDCEATFTSEVRLRHHMMVTHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYTCIVCKQRFKYLGDKNKHERRHESLGGQGFKRLVTGRHVKEKEREEGETSEEQEQYEEVERELEEQYEGVEEFDATEQIVKFEPQEIDGEYEQDYQQEYQETSREASEAAEVIMHMEDATVYTEEVTADNIEAAEMITDEIMTSQILQAGTVVHLQQQGDDGKIQVIPVMLSLPDLTDGGGEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047463;
- 90% Identity
- iTF_00047463;
- 80% Identity
- -