Aalt010171.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- -
- Assembly
- GCA_963921955.1
- Location
- OY998103.1:3790636-3794435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.029 3.7 8.8 0.4 6 21 12 27 6 28 0.86 2 14 0.2 26 6.2 0.0 2 20 34 52 33 53 0.93 3 14 2.3 2.9e+02 2.9 0.2 1 12 225 236 225 245 0.89 4 14 0.036 4.7 8.5 2.3 1 20 348 367 348 369 0.94 5 14 4.6e-05 0.0059 17.6 1.8 3 23 375 395 374 395 0.97 6 14 0.00012 0.015 16.3 3.6 1 23 405 427 405 427 0.95 7 14 0.061 7.8 7.8 0.3 1 23 446 467 446 467 0.89 8 14 0.0011 0.15 13.2 0.1 2 23 473 494 472 494 0.95 9 14 4.4e-05 0.0056 17.7 4.8 1 23 541 563 541 563 0.99 10 14 1.9e-06 0.00024 22.0 3.7 1 23 569 591 569 591 0.96 11 14 8.4e-05 0.011 16.8 5.1 1 23 597 619 597 619 0.98 12 14 4.2e-05 0.0053 17.8 1.2 1 23 625 647 625 647 0.98 13 14 0.00022 0.029 15.5 0.1 1 23 651 673 651 673 0.98 14 14 0.00011 0.014 16.4 0.2 1 23 681 703 681 703 0.98
Sequence Information
- Coding Sequence
- ATGGgatcttcaattttaatttgtcCCATGTGCTGTGGTGAAACATTTAACAGTTCACAATCACTGAAATATCATTTACTTAGTATGACGGATAATTTATATTGTCCTGGTTGTTCAAAGAGATCAGATTCTGTTGCTGCATTGATACAGCATCTTGATGCTTGTGGTAATGGTAATAATGTCACATTTGAAGAAACTGTTGGAGAAATTAGAATTGGTGAAAATGAAGTTTTAATGGACACGAATGTTGAACAAATTCACGAGAGTTTTTTAGCTACCGTTGACAACGAGGGAATCATGATTGTTGGTGGTCCAAGAACAATTGAAGTTGATGAAAATGGTCAAATTAACATGGtgcagaataataaaaatcctGATAATATAAAGCGCGAATCAGTTCTTCCGGACGACGAGTATCAGGGACTCGAGAAGATCGAAGATGACGAGTCATCAGTGTCAGCTattgaagaaaaggaaaatgacGACAATACACCGGTGATAAGTATCCCGGAAACGCCTGACGATAGAACTAATGACAATGATGTCATAATATTTCATGAAGATACAACTGAATTTCTCGAGGACGAGCAGAGTCTAATGGAGATCAGTAATGAGGATGAAATCAACGAGATTGGTGAAGAGGAGTTGATGAagATTGACGCATCAGCCTTGTACAGCTGCAGTAGTTGTGGCATGGGTTTCAACTCAGTCCTGGACCACATAAAAGAGTACCACGATGGTCAAGAAGTGGTTCTCGAGATGGCCGATGACGAAACTGACCCCTCTCCCCAACCGCCCGAAGAAAAACCGGAAAATCCCCGAGTTCCCCGGACAAAACgccaaaaaatgaatacaatAAAGACTGAAGAATGTATCGACAGCGAAGGCAGACTCTATATCCGCAATGTCGTCCAGATCGAACCATTCTGGGAGCGTTCGACGAGCCAAACGACTGTCAAATCAACTCCGATGATCGAGAAGTTCTTCTCGAACACAGAGGGAATAAAAACCCGCCCGAAACCCGAGACAATCGCTAAGCAGTATCACTGCAATCAGTGCAATGCGGAGTTCCCTCGACTGACGGATTTCCGTAATCATGCGTGTCAGAATGGCGTCAATCACTGCGACACATGTGATCAATCGTTTGCAACGCTCAAGGCCCTGCagaatcacatgaaactcCATGATACTGACAACGACGAGAAACGCACGTTTCTCTGTACAATTTGCGGTACGAAATTCTCGTCGCACAAGAGCCTGCGTCTGCACTCACGCATGCACGCACCAGTGCGTGAGAGACATGTCGATGCACCAGAAGGCACTGGCGACAACAACTTTACGTGTCTTGAGTGCGGAAAAACACTTTCCGAGTCGTATAAATCTGCACACATGGCGTTGCACAGTGGCGACACGATAACATGTGGTATTTGCAACAGAAAATTTGACTCGACAGAGTCACTGACGATGCACGCAGCTGTTCATCCAGAATTGGGCATCAATTCCGGGGCTTTTGGGACTAGTGGGACCGGAGCGAGAGGAACAACTCCATCGCCAACACCGGCGAATGATAATGGAATTCTTGGGAATAATGAGAATGATAATGGAGATCTGACGAAACCGTATCAGTGTCAGCATTGCGGGAGAAGATTCACCAGACCTCATGAGAAGGTGAAGCATGAGAGGATTCATACGGGAGAGAAGCCACATGCTTGtgagGTATGCGGCAAGACTTTCCGCGTGTCCTACTGCCTGACATTGCACATGAGAACTCACACGGGTGTACGTCCCTACGAGTGCAAACACTGCGGCAAACGCTTCAAGGCCTCATCAGTCTACAATCATCATCTGTTAACCCATGGCGAGGAACGGGCCTACAAGTGTCCATTCTGTGTGAAAACATTTAAGACCCGTGTACAATTAGCTGGACACAAAAATAGCCACACAAAACCATTCAGATGTACAGAATGTTCGCGTCCATTTGCATCACTCTATGCAGCACGTGCGCACATTGCAACGCacaaaaaagataataatttaaaattcagttgCTATATTTGTGGAGCTTCATATGGTCGTGCATTTGCATTGAATGAtcacatgaaaaatcataGTAATGAAACAATACCAGCACCAGAACCAGcaagagaagaagaagtacatgaaaattatttaattgatgatgaagaaataaCTGAGGAAGAATTAGTTCATGGAATTAATCCAGACATTGAATTAAGTGAGactggaattaaaaaattcgatgactCTGATTAA
- Protein Sequence
- MGSSILICPMCCGETFNSSQSLKYHLLSMTDNLYCPGCSKRSDSVAALIQHLDACGNGNNVTFEETVGEIRIGENEVLMDTNVEQIHESFLATVDNEGIMIVGGPRTIEVDENGQINMVQNNKNPDNIKRESVLPDDEYQGLEKIEDDESSVSAIEEKENDDNTPVISIPETPDDRTNDNDVIIFHEDTTEFLEDEQSLMEISNEDEINEIGEEELMKIDASALYSCSSCGMGFNSVLDHIKEYHDGQEVVLEMADDETDPSPQPPEEKPENPRVPRTKRQKMNTIKTEECIDSEGRLYIRNVVQIEPFWERSTSQTTVKSTPMIEKFFSNTEGIKTRPKPETIAKQYHCNQCNAEFPRLTDFRNHACQNGVNHCDTCDQSFATLKALQNHMKLHDTDNDEKRTFLCTICGTKFSSHKSLRLHSRMHAPVRERHVDAPEGTGDNNFTCLECGKTLSESYKSAHMALHSGDTITCGICNRKFDSTESLTMHAAVHPELGINSGAFGTSGTGARGTTPSPTPANDNGILGNNENDNGDLTKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECKHCGKRFKASSVYNHHLLTHGEERAYKCPFCVKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIATHKKDNNLKFSCYICGASYGRAFALNDHMKNHSNETIPAPEPAREEEVHENYLIDDEEITEEELVHGINPDIELSETGIKKFDDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048148;
- 90% Identity
- iTF_00048148;
- 80% Identity
- -