Aalt000016.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- -
- Assembly
- GCA_963921955.1
- Location
- OY998097.1:181940-185909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.003 0.38 11.9 2.3 1 23 352 374 352 374 0.97 2 19 0.015 1.9 9.7 0.5 2 23 409 430 408 430 0.96 3 19 0.0049 0.63 11.2 2.5 1 23 491 513 491 513 0.94 4 19 0.00011 0.014 16.4 1.0 2 23 517 538 517 538 0.98 5 19 0.00049 0.063 14.4 1.9 2 23 579 600 578 600 0.97 6 19 0.00089 0.11 13.6 5.1 1 23 605 627 605 627 0.96 7 19 0.00045 0.058 14.5 0.3 1 21 633 653 633 657 0.92 8 19 0.0043 0.55 11.4 3.3 2 23 730 751 729 751 0.95 9 19 0.00019 0.024 15.7 5.0 1 23 805 827 805 827 0.97 10 19 0.00027 0.035 15.2 0.7 1 20 832 851 832 853 0.94 11 19 0.15 19 6.6 0.3 2 23 864 885 864 885 0.97 12 19 3.8e-05 0.0049 17.9 1.7 2 23 924 945 923 945 0.97 13 19 2.5e-05 0.0032 18.5 1.6 1 23 950 972 950 972 0.95 14 19 0.00027 0.034 15.2 1.9 1 23 978 1000 978 1000 0.98 15 19 7.6e-06 0.00098 20.1 0.4 1 23 1017 1039 1017 1039 0.95 16 19 1.4e-06 0.00018 22.4 0.3 1 23 1045 1067 1045 1067 0.99 17 19 2.7e-05 0.0034 18.4 0.3 1 23 1073 1095 1073 1095 0.98 18 19 0.00014 0.019 16.1 4.1 1 23 1101 1123 1101 1123 0.96 19 19 0.01 1.3 10.2 0.4 1 20 1129 1148 1129 1150 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGGTATTGATACGTCTGAACCGTCACAGGCTGACGATGAGCCTGTTGAATCAATTGTTGAAATATGCCGTGTTTGTTTACATGGTAATTTAATTATGAGAGACTTATTCATGGATAATCAAATTGATTCATTGTCAACTAAAGCGATGAGTTTTGCAAAAGTTAAGATGACGCCGGGTGATGGATTACCAAGTCAAGTATGTTGCGACTGTGctgaaaaattagaatcaGCCTATGAATTCAAGCTCCAGGTTGAACAGGCTGATAATGCTCTTCGTGAACGTTACGAAACCCTAAACATAAAAGAAGAGCTTTACTTTAACGAGGTTGAAGTGCATTTGGAAAATGAACGTCATAGTAATGTCCAAGAGATAGATGTTGATGCCCAATATGATGAAGCAGCTGTTTCCCTGAATGTGACAGATGAAAAAGCAAATTTACTAAAAGATCATCTGGCATTGCTTCAAGTTGAGAAACTTGCAGTTAATGAGCATCATGTTTTAGAGGATCCTGGACTTGTCGAGGATGAAACAGAAATAGTTCACAATGTTGAGAGTCATCAAGATGATACACTGAAGCAGCAAATAATGCAAACTGATGATGAATAtcttgatgataatgatgagaCAAATGAACAACAAATGTTGGATTCTAATGATGAAGATGTGAAAACAGAGAGTatgaatgagaatgaaggaataaatATTGGAGAGCACGATTATATCGTTCAAGATCGTTATAGTTTGACAAATGAACAGGAACATGAATTAATGCAGCaggataatgatgaaaatggtTCCCAAGGCTTTCCAACGTTGATGTTGGATGATGATGAATCAAATGATGTATGTGAATCGCAAAATCACTTAAGAGAAGACAATCAAGAGATTAATGAAAGTGTTGATAAATGTGATGctgttaaaatgaaaatgcaaTCACAGGATAATTCAGGACACAATTCGGATGAAGATAATTACTTTGAGAATCTCAATTTAAGCAGTAGACTCAAACAATTTCATGATGATAAATCAGATAAAGTATTTTTCATGTGTTATTTGTGTGACAAACAATTTGTTTCAAAAGACATATTGAAAGAACATATGCACTCTCACGAGGAAGTGAGAAAGacattgtcattgaaaaagaCATCGgataaatcacaaaaaaattcatcaccaattggaaaaattccaccatccggaaagaaatcaaataaatgTCCATATTGTGGTAAAGAATATCTCTACGTTATATCATTTAATAAACATATAAAACAGcacgagaaaaattctgatgagaTAAAAGAAAGTTTTGATTCAATGAAAGAAGGGAATGAGTCAGATTCTGATAGTTTCGATAATACAGAAACATTTGAAGTAATTCACGAGAATAAATCCGAAAATCTCAACTTTAATCATCACAAGACAACTAATGGAGAGAATAATGATGGACAGGAGAtatatttttgcagaaaatgtCCTGAAAAATTCCCGACAGAAACTGATCTTAATCGACACAATCTCCATCATAGCCCTGAAAAGTGCAACATTTGTGATGAAGAATTTGATACTTtagaaaagttaaaaaatcaTCGTTCAACTCACGTGATGGAGGGTGTTTTAACTGAACAGGATTTACGTGATGAATTAGCAGATATGTGCAACAAAGAATACGAAGAAAATACTCAAATAAATAATCTAGTTGATGAAATTCCCGGTGATTTAAAATGTACGAATTGCTCGATGACATttatgagcaaaaaattgCTCTTGAAACACATGGATTCTCATGAAAGAATGAAGTACAGATGTAAATTATGTCATCAGGAATTCGTTAAAAAGGAGCATTTACGGAAACACGCGGAGCAACACACGAGAGTCAAAATCTACAAGTGTACGGATTGCAGTAAAGTTTTTGGGAATGAATTGACCTTGCGTAATCATTTAATTGCCACAAATCATAAGACAATTGTTCAAGGTGAGGAGTACGATCCTAATAGAAGAATAAAGAGAGTTGCTGCCAGAGCagcacaaaaaattattgataaaataaaaactgaaGATGGCTTGGACGATTCAGAAAGAGACGataatgatgaattcattggTGATTCTTCATTACTAagaagtgatgaaaaattacaattacaatCCAAACGCACAAATAGAAAAGATTTAGAATGTGCGACATGCAGGAAGAAGTGCAGTTCAAAGCAGTATCTCTTGAGACACATGGAGCAGCATACTAAGGAGGAAAAAGCTGAACAACTTGAgagatctaaaaaaaatacagatatGAAGgaattccaaagaaattgTGGCATGAGTGTATTTGGtagagatgatgatgataatgatgatgacgatgatTTTGAAAGTGGCTTAGATTGGCCAATGGATACGCACGAATGTACAACTTGCAAGAAACGTTATTCCACAAAGAAGTCACTTTTACGCCACCAATTGCTCCATGAAGAACCGAATTTTGAATGTGACATATGTAATGTCAAATTTTACAGAAAAGATAAATTAAAAGCACATTATGATAAATGctcggaaaaaaatccagatcAAGTGAGAAAATGCAATATTTGCggtgatatttttgaaaataatgaaatattacGTGAGCACAGATCGAAGCATGTTGATGAGGGAATATTAACTGAGGAAGACTTGAGAGAATTGGAGCCTGGCTCGGAGGAGAGAAAACAGGGTGAGAAAATTGCACGAAAGAGACGAACTGATATTGTTGGATTAGAATGTACTGAATGCAACAAACACTACACATCACGAAAGGGATTATTAAGACACATTCAGGTGCATGAAGGTAAAAAATATCTGTGTGACATATGTCCAAAGAAATTTTATCGTCgtgaacatttgaaaattcatgttgCCAAGCATAACATGATAAAGCCATACAAATGCACTAGATGCTCAAAGAGATTCATAAAAGAAGAGCAACTCTCAGCACATCTAACTAAACATGAGAGAacattcaagaaaaataaagaaactgATAATACTTCAAAGAGATTTTTATGCGAAATTTGTTCAAAAAGTTTCACCCAGTCTACAACATTAGTCGCACATTTGAGAGCTCATAATGGTATAAAACCCTATGTTTGTGAAGTTTGTGCTCGACCATTCACAACAAATGCTTATTTGAAAATGCATATGAGAACTCATACACAAGAGAGGCCATACAGTTGTCAGTACTGTTCACGGGCATTTGCTAGAGCTGATACATTGGCTAATCATTTGACATCACACACGGGCGAGGCTAAGTATCATTGCAAATATTGTCCGAAAAATTTCCGACGTTTGAAATCATTAAAGGAGCATGTTTTCATCCATACTGGACAACGCCCGTATGCGTGTCCAACGTGTGATCGTAGATTCAACAATAATGGCAGTAGATACGCGCATTCAAAGAGATGCAAGCAAAATCTCCTGCAGAATCAATCTAGAAGTCAGAATCAGACGCAACAAATACAAACGCAAGTGCAAAATGTTGTAATTGACTCGCAGCCTCAAACGCAGCAAGTGCAACAAATTCAACAGGTTCATCAGGCGCAACAAGTGCAAATTCAACGACAAAATCCAACACAGACTATAAGATTGGCACAAGCTGTTGGAACAACAATGCAAGTTGTTCagtcgaaaaatatcaagacaATTACAATAACACGGCAACCTGATCAAATTGGACAGCATCAAGTCATTCAGCATCAGGAATTACTTATGCCACTTATTTTACCGTTAACGGTTACATTGGCCGATGGTGATGAGGAAGTTATACTACCTGAGGgaacaaaaatatttacaacAACGTAG
- Protein Sequence
- MDAVGIDTSEPSQADDEPVESIVEICRVCLHGNLIMRDLFMDNQIDSLSTKAMSFAKVKMTPGDGLPSQVCCDCAEKLESAYEFKLQVEQADNALRERYETLNIKEELYFNEVEVHLENERHSNVQEIDVDAQYDEAAVSLNVTDEKANLLKDHLALLQVEKLAVNEHHVLEDPGLVEDETEIVHNVESHQDDTLKQQIMQTDDEYLDDNDETNEQQMLDSNDEDVKTESMNENEGINIGEHDYIVQDRYSLTNEQEHELMQQDNDENGSQGFPTLMLDDDESNDVCESQNHLREDNQEINESVDKCDAVKMKMQSQDNSGHNSDEDNYFENLNLSSRLKQFHDDKSDKVFFMCYLCDKQFVSKDILKEHMHSHEEVRKTLSLKKTSDKSQKNSSPIGKIPPSGKKSNKCPYCGKEYLYVISFNKHIKQHEKNSDEIKESFDSMKEGNESDSDSFDNTETFEVIHENKSENLNFNHHKTTNGENNDGQEIYFCRKCPEKFPTETDLNRHNLHHSPEKCNICDEEFDTLEKLKNHRSTHVMEGVLTEQDLRDELADMCNKEYEENTQINNLVDEIPGDLKCTNCSMTFMSKKLLLKHMDSHERMKYRCKLCHQEFVKKEHLRKHAEQHTRVKIYKCTDCSKVFGNELTLRNHLIATNHKTIVQGEEYDPNRRIKRVAARAAQKIIDKIKTEDGLDDSERDDNDEFIGDSSLLRSDEKLQLQSKRTNRKDLECATCRKKCSSKQYLLRHMEQHTKEEKAEQLERSKKNTDMKEFQRNCGMSVFGRDDDDNDDDDDFESGLDWPMDTHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDIFENNEILREHRSKHVDEGILTEEDLRELEPGSEERKQGEKIARKRRTDIVGLECTECNKHYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLSAHLTKHERTFKKNKETDNTSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQNQSRSQNQTQQIQTQVQNVVIDSQPQTQQVQQIQQVHQAQQVQIQRQNPTQTIRLAQAVGTTMQVVQSKNIKTITITRQPDQIGQHQVIQHQELLMPLILPLTVTLADGDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00047433; iTF_00048127;
- 90% Identity
- iTF_00047433;
- 80% Identity
- -