Aalt000898.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aleiodes alternator
Gene Symbol
-
Assembly
GCA_963921955.1
Location
OY998097.1:8695724-8700993[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-11 9.5e-08 32.2 0.1 7 72 234 297 230 299 0.85

Sequence Information

Coding Sequence
ATGAATGCCTTAGTTACTGATGTAAATGGCGGGAACGCCAATGCAGCGCACCATGATTCTAACCTAGAAGACATTGAGAGTCCAAAATTACAGATAGACACTGAAGAATcaactgaaaatttatataaacgTGATAAAATGTATGAGGATGGAGTTAATGGTGATGATAAGTGTGTCGTAAAGCAAATGGACATTGTTAAACGTAAAATGCGTAAATCAAAGTCAAATTCAACTGGTAGTGTTGAAAATGACGCCAAGCCAAGGCTCAAAGGatcaaagagaaaattatcagaGCCAGATGCTTTAAATTCTGATGAATGTGGTGAATTTATGGGTTTTTCACCATCAAGTATCATGATTATCGAGACAGGTGTACAgatactcaaaaaattaatttctgaggCTGAATTGGAGGAAATTGGTAATATTAAACGTAAACGTACACCATCAATTAAGGGTTCACCACCTGATTTAGAATCAAAGACACTTGCTGAACGTTTGGAGAGTCCAAAAGGTCCAGATGATGCTGATGATAAGGAGACAATTTCTCCTAAAGAGAGTAAAtccaagaaaaatggaaaggatCCAGAAACAACTGCTGTTAATACAACTGCCAATATGGCGGACACTGATTATGATGAGAGTCTGACAGGTCAGAGCAtagaaaatgatgataaaaatgattcacCAGATGCTATGTACAGAGAACCATTCAAATATGGGTGGAAACGAGAGATGATATACAAGGGTGGACTTGACAGTAATTTGAAACGATCTGCTGATATTTACTACTACTCTCCAAAAGGAAAGAGGGTCAAGAACCTCAGAGAAGTGGCTGAGTGTCTGACAACAAAAGACCTGGTACTGGACAATTTCACGTTTTCTAAAGAACCCATTGGTATGAATGATCCGGCTTTGGAGATCATACGAGATGCTAAGAGACTCAGATCAGATTCAACGGGTACACCGACTTCAATTCCAGCTAAGAGAACACTTGGTAAACGTTCATTGGTGAAGAACTCAGTAACACCACCACCTGCACCTAAGACAGAGGTGAAAACATCGCCTTACAAAGCTACACCCAAACTTAAAGTACAAGTTAAAGTACCTGGTAAAAGAGGACCTGCAAAGAAGGAGGTGAGACCTGCAAAGGAGCCGGAAATGCTGCCACCCCAGTGGAATTCTCTGAATGCAACACGAAGAAGTCAAGGACCTGCTGAGAAAGTCACATCTCCAAAATCAAAGAGAATATTAAAAGCAAAACTACAGGAACCCTGCAGTATCAGATGCCCAATGAGTATGGGCCTAATACCGAGTCTACAATGCTGTATTTGTCTGTGTCTTTATCATCCGGATTGCGTTGGtggtaaaaataattcaatcagcAAGGAATATATTTGCAAGAACTGTCAAATGGAATTGGAACCTAGTGCACATCCAACGTCCTCTATAACACCACCGCCATTGATACCAATTAGTATGATAGGAAGTCATGGTATAAAGTTGAATTCAATTCCCAGTGATGGGCCATCAAAATTACAGCACTCAAAAACAGAAAATGACAAAGTAGCGAAGGAAAAACCTAAGGCAAATACTTCTGGAGTATCTTCGATGATTCCTAAAATGGACAGTTCTTGGCTTGTACCACCtgtcaatgaatttttgcagaGCCACGATGGTTCAGTGCCAAAACCAGCTCAAAATATCGCAAATATGGGTGGTAAACGTTATATTGTTGTCCCGAAAAATAATGACATGGCAGTTCAACCAGCTATACCAATCAAATCTGACAAAAtggctgagaaaaaaattgctggaGAAAATGCATTGACTCTTACAAATCCGGAGAAATCTAATTTTGATGCACAAAACACTTGTCCAATCCCAGATCGTCGAATGAGtcaagataaaaatgaaagaaatggagaaaCACGAATGCGAAATGGTAAAATAATGGATTCATCATATAGTACAAGAGAATTGATTCCTCCTGTTATTGAGACAAAATCAGATGAATCAGAGCCAGCTGTACGAACGATGGAGGTCCATATGGATGTTGAGTCTGTTGAACTTGATAAACCTGGGGAAATTGAGTCACCAGATGAATCAAATATTCCAGTTAAAGATACTGCTACAACTGATAAAGAAgatgaaattgataataatcatgaaaaaaatgtggataCACCTGTAATTTTACagaatgatgagaaaaaaattcaagagactccgaaaaaaaaatcaaaatatgatAACAGCACAAAaaaaaaaccAGTACCAGTTGAAGTCCCTGAAAAACAGCACTTTATGGTGTCAGTATGTGCGGGTTACGATGCACTctccagaattttccaataCCTCAAAGTCCAAGAGCTTCTTCGTGCTGCACGTGTCTGCAGAATGTGGAGAGATCTTGCTGCACATCCTGCATTGTGGAAAACTGTTCGTATGAAGAATAGTCAAGTGACCGATTGGGATGGTTTAGCAGCTGCATTGAAGAGACATGGTACAGAGCATTTGGATCTTCGGAAAATGCTTGTTGCCGGTGAATCAGACAGCATTTGGGAAAAGTTCATAGCTGTCATTCCAAATGTCCCAAGTCTGATAAAACTTGAACTCTGTAGATGTCCAGCATCTGTAGTAGAAGATATATTGAAATGTTGTCCTCAACTTGAAGTCTTGAGTGCTATGTCAATTAAATGTGACTCATTAAATGTAGAATCCCTTGGAAACCTCAAGCACCTAACTGAATTGAGGCTCAAATCAATAAGTGGTATGTCAATTCAGGAAGATCTTTCACCACTGGCTGAGCTAACGCAGTTGACACATCTGAGTCTGACGTCAGTAAAAGAACTTGGCAAGAAGAAGATTGATGTAATAAATAACTTAGTTAAACTTGAAACACTTGAACTTGGAGAGTGTTCAGATTTTCCGGAGAAATTTGGTACAGAggttttattaaaattaaccAATCTCGAACGACTGAGACTGGAAAAGGGTCAGGGCAGCTGTTGTACATTTGATATTCTTGATGGTATATcaaagctggagaaactccatCAGTTGGAACTCGTTAATTTTGACGTGAAGAATGGATTTGACAAGTACTTGGCGAATtgtaaaaatatcaagagactcCTAATTATCCCAACTTACATTTCTCAATCAGCAACATCGAATAATATGGTTCTTGGTGGAGTCACTGAGCTTTCTGATAATCTAACGCATTTCGTGTGGGGCGTTACACTTGAACTGCTGAGAGTAACTGAATTATTTGTTGATCAGTGTAATCAGATGAATAAACCAGTCTCTGGGGATTCCATTCCAGTTCTGAAACCAGTACCCTGCTTGAGACTCATTGAGCCGATTGATGAAGTTAATAACTCAGTTCCAGatgaGAAACAATCAAATTTGACGAATCCACAAGTGGATATTTTGCCTTTGCCTCAATTGCAGAAACTGCTGCTCACAGCATTACCAAAAACACgggtgaaaatattgaaaataccTTTCCATGCAACGTGGAGGCAGAGTATATCAGATACTACATCTCAATAA
Protein Sequence
MNALVTDVNGGNANAAHHDSNLEDIESPKLQIDTEESTENLYKRDKMYEDGVNGDDKCVVKQMDIVKRKMRKSKSNSTGSVENDAKPRLKGSKRKLSEPDALNSDECGEFMGFSPSSIMIIETGVQILKKLISEAELEEIGNIKRKRTPSIKGSPPDLESKTLAERLESPKGPDDADDKETISPKESKSKKNGKDPETTAVNTTANMADTDYDESLTGQSIENDDKNDSPDAMYREPFKYGWKREMIYKGGLDSNLKRSADIYYYSPKGKRVKNLREVAECLTTKDLVLDNFTFSKEPIGMNDPALEIIRDAKRLRSDSTGTPTSIPAKRTLGKRSLVKNSVTPPPAPKTEVKTSPYKATPKLKVQVKVPGKRGPAKKEVRPAKEPEMLPPQWNSLNATRRSQGPAEKVTSPKSKRILKAKLQEPCSIRCPMSMGLIPSLQCCICLCLYHPDCVGGKNNSISKEYICKNCQMELEPSAHPTSSITPPPLIPISMIGSHGIKLNSIPSDGPSKLQHSKTENDKVAKEKPKANTSGVSSMIPKMDSSWLVPPVNEFLQSHDGSVPKPAQNIANMGGKRYIVVPKNNDMAVQPAIPIKSDKMAEKKIAGENALTLTNPEKSNFDAQNTCPIPDRRMSQDKNERNGETRMRNGKIMDSSYSTRELIPPVIETKSDESEPAVRTMEVHMDVESVELDKPGEIESPDESNIPVKDTATTDKEDEIDNNHEKNVDTPVILQNDEKKIQETPKKKSKYDNSTKKKPVPVEVPEKQHFMVSVCAGYDALSRIFQYLKVQELLRAARVCRMWRDLAAHPALWKTVRMKNSQVTDWDGLAAALKRHGTEHLDLRKMLVAGESDSIWEKFIAVIPNVPSLIKLELCRCPASVVEDILKCCPQLEVLSAMSIKCDSLNVESLGNLKHLTELRLKSISGMSIQEDLSPLAELTQLTHLSLTSVKELGKKKIDVINNLVKLETLELGECSDFPEKFGTEVLLKLTNLERLRLEKGQGSCCTFDILDGISKLEKLHQLELVNFDVKNGFDKYLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSDNLTHFVWGVTLELLRVTELFVDQCNQMNKPVSGDSIPVLKPVPCLRLIEPIDEVNNSVPDEKQSNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTTSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00046978; iTF_00047966;
90% Identity
iTF_00046978;
80% Identity
-