Agra000060.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- Aef1
- Assembly
- None
- Location
- Contig35:2152046-2153447[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 29 4.4 0.2 22 48 189 215 180 219 0.87 2 4 4.7e-05 0.12 12.0 0.0 21 51 216 246 213 247 0.88 3 4 0.023 58 3.4 0.1 21 46 244 269 242 272 0.91 4 4 0.00024 0.6 9.8 0.1 21 47 272 298 270 305 0.88
Sequence Information
- Coding Sequence
- ATGCATATAAAAAGTCTGCAACATGCTCATGCTGCTGCAGCAGCGGCAGCAGCCATGCCAAACTGTGAAATTGTAATCGTATCATCTTCGCCTAATCATAATAACAATAACAACAACAATAATAACAATGAAAGTACAAATGGGGGATCGAGTAATGGCAGTGGAGGCGGCGGTGGTGGTGTGACTAACAATGGTCACCAGCACCAACAACAGCAACACGGTTCCTCAGCCCCAACACCTACTGAGATTCCAATACCGTTTATGCATTTGGCAGGAGTGACAGCAGAGGCTCATGCTGCCGCTCAAGCGGCTGCTATGGCTGCAGCACAAGCGGCGGCCGCTCAAGCAGCTGCTGCCGAACATGGCGGCGGTAATGCACCTCCACCGGGCAGTGCTCTGGCCCATCATCATGCCATATTGCAGCAACATCCCTTGGCTCACCTGGTGGCCACGGCTGCACACAGTCCTGCTCTATCCGAACAACATTTCATAGCCCGCGATGCTACCGTCTTGACTAATGGCCATAATGGCAACTCAACGTCGGTATCGGGTGGACCTGCCCCCGAAAAACCATTTCAGTGTAATGTCTGCGAACGACGATTCCGCCAATTGAGTACTCTCACGAATCATGTAAAAATTCATACCGGAGAAAAGCCGTACAAATGTAATGTTTGTGATAAAACCTTTCGTCAATCGTCCACTTTGACTAATCACTTGAAAATTCATACCGGTGAGAAGCCATTTAATTGTACCTATTGTCCGAAACATTTTCGCCAATTGAGTACATTAACAAATCATTTGAAAATTCATACAGGTGAAAAACCCTTTGAATGTGCCGTTTGTAAAAAACAATTCCGTCAATCTAGTACTCTGAATAATCACATAAAAATCCATGTTATGGACAAAGTCTACGTGCCCGTAAAGATTAAAACTGAGGAGGAGGAAGGGTGA
- Protein Sequence
- MHIKSLQHAHAAAAAAAAMPNCEIVIVSSSPNHNNNNNNNNNNESTNGGSSNGSGGGGGGVTNNGHQHQQQQHGSSAPTPTEIPIPFMHLAGVTAEAHAAAQAAAMAAAQAAAAQAAAAEHGGGNAPPPGSALAHHHAILQQHPLAHLVATAAHSPALSEQHFIARDATVLTNGHNGNSTSVSGGPAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00200414;
- 80% Identity
- iTF_00045610;