Basic Information

Insect: Aldrichina grahami
Gene Symbol: grau
Assembly: None
Location: Contig4:55895-61869[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0071 0.29 11.2 0.2 2 23 261 283 260 283 0.94

2 10 0.037 1.5 8.9 0.5 6 23 293 310 293 310 0.99

3 10 0.01 0.41 10.7 3.7 1 23 316 339 316 339 0.94

4 10 0.00034 0.014 15.4 2.3 1 23 347 370 347 370 0.91

5 10 6.2e-05 0.0025 17.7 2.7 2 21 376 395 376 396 0.94

6 10 0.1 4.3 7.5 0.8 2 23 404 425 403 425 0.95

7 10 0.0016 0.064 13.3 0.9 2 23 434 455 433 455 0.97

8 10 0.007 0.29 11.2 0.6 1 23 462 485 462 485 0.96

9 10 6.5e-06 0.00027 20.8 2.3 1 23 491 513 491 513 0.98

10 10 2.4e-05 0.00097 19.0 4.4 1 23 519 542 519 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0071	0.29	11.2	0.2	2	23	261	283	260	283	0.94
2	10	0.037	1.5	8.9	0.5	6	23	293	310	293	310	0.99
3	10	0.01	0.41	10.7	3.7	1	23	316	339	316	339	0.94
4	10	0.00034	0.014	15.4	2.3	1	23	347	370	347	370	0.91
5	10	6.2e-05	0.0025	17.7	2.7	2	21	376	395	376	396	0.94
6	10	0.1	4.3	7.5	0.8	2	23	404	425	403	425	0.95
7	10	0.0016	0.064	13.3	0.9	2	23	434	455	433	455	0.97
8	10	0.007	0.29	11.2	0.6	1	23	462	485	462	485	0.96
9	10	6.5e-06	0.00027	20.8	2.3	1	23	491	513	491	513	0.98
10	10	2.4e-05	0.00097	19.0	4.4	1	23	519	542	519	542	0.97

Sequence Information

Coding Sequence: ATGGTTTGTCGATTATGTTTAAAAGAATCAGATGATTTAATTAATATTTTCAATAAAATTGATGGTGAAGTTAAGATGTCAGAAGTGGTCAGTAAATATTTTTGGTTTGAGCCAAAGAAGGATGATCCAATTTCAACTGTTATTTGTAAACATTGTTGGCAGAAAGTATACGATTTTCATGAATTTTATAAAATGGTAGATACAGCCTACAGAGTATTGCAAGATGGCTTTATAGAGAAAGGTGAAAATATTACCCACTGTGATTCTTCTACAACTGAATTTGAAGAATATTGTTCTTTACCCTACAAATGTGAATCTTATGACAGCATTTGTGAAATGGGAGAATTGCCATTTCAAATGCCATCCAAGGATCTCGATGAAAGTTATATAAAAACCAATAAAATAGCACCTCGCGATGTGTTGTCTGATAACTATATTTGCAACGACAACCATCTGGATGCGAATACATCTTACAATGAAATTATTGTAGCTACTGGGAAAAAAGAAAACACAAAAAATATTTGTAGGGACATTAATGAATCTGAGTCATATACAGAAAAGAAAATTGCACAAAAGTCGAGTAAGCTCAAATATGTTCTGTCTAACTCGGTAAATAAAAATACAATTGCAAGCAGCGCCAAAGGCTCAATCGGAAGAAAGAGAGGTCGCCCAAAAAAAGAGAAAGACCTAATGAAGCCACGAAAGAATCCAGACGAACAAGAAACGTACAAAGCAAAGATAAAAGAGTATGATGCTGAAATTGCAAAGTACATGTCATTGTATTGCGATATTTGCAATAGTAAATACGAAAATTTTCCTGCACTAAGAGTTCACATGCGCGATACTCATAATATCAAAGAGGGATATGTCACTTGCTGCGAAAAAAAGTTTAATAAAAGAGCTCTTCTCTTGTATCACATACGGCAACATTTAAATCCCAGTTGTTATCGATGCGAAGAATGCGATTTCACATTTTCGGATCGTCAATCTAGACATAATCATTTCTTGGTTAAACATCAAAAAGATGAAGATAAAATTTACGCATGCTCTCAGTGCTCGAAAAAATTTGTAAGGAAATATCTTCTGGAGCAGCATAAATCATTTTCACATCGAGATTTTATACCCAAGTGCAAAAATTGTGGCAAAAGATTTAAAACTGCGAAAGAGTTGACGGAACATCATAATAAAGATGACTGTCAACCTGGAACAATGTGCGATATTTGTGCAAAATGTATTCGTGGAACCGCTGCTTTCAAACGACACCAGCTTGAGCATCAGGGAGTTGCGATACCTAAAGTACAATGTGATTTATGCGGCTTATGGTATAAAGATAAAAGGGGGTTAAAGAGACACAAAAGAAAACATATTGAAGCAAAGGAACCTCATGTTTGTGACATATGCCAAAAAATATCTCCCAGTCGCAGTGCGATGTTGAGTCACAAGCGTTATGCCCACGGGACAGATCGTATACATGAATGTAGTGTCTGCCAAAAGACATTTAAGAAGCCAATATCATTGAGAGAGCACATGACAACACATACTGGAGAAGTCCTCTATAATTGTCCACACTGTCCTAAAACGTTCAATTCTAATGCAAATATGCATTCTCATCGCAAAAAAGTACACCCCAAAGAATTTGAAGAAACTCGTAAACAACGCAAACAAAATGTCTCTCTTGGGGAACACATATGCTGGTCCGAAAAAGTCGAAAAAATCATTTTATAA
Protein Sequence: MVCRLCLKESDDLINIFNKIDGEVKMSEVVSKYFWFEPKKDDPISTVICKHCWQKVYDFHEFYKMVDTAYRVLQDGFIEKGENITHCDSSTTEFEEYCSLPYKCESYDSICEMGELPFQMPSKDLDESYIKTNKIAPRDVLSDNYICNDNHLDANTSYNEIIVATGKKENTKNICRDINESESYTEKKIAQKSSKLKYVLSNSVNKNTIASSAKGSIGRKRGRPKKEKDLMKPRKNPDEQETYKAKIKEYDAEIAKYMSLYCDICNSKYENFPALRVHMRDTHNIKEGYVTCCEKKFNKRALLLYHIRQHLNPSCYRCEECDFTFSDRQSRHNHFLVKHQKDEDKIYACSQCSKKFVRKYLLEQHKSFSHRDFIPKCKNCGKRFKTAKELTEHHNKDDCQPGTMCDICAKCIRGTAAFKRHQLEHQGVAIPKVQCDLCGLWYKDKRGLKRHKRKHIEAKEPHVCDICQKISPSRSAMLSHKRYAHGTDRIHECSVCQKTFKKPISLREHMTTHTGEVLYNCPHCPKTFNSNANMHSHRKKVHPKEFEETRKQRKQNVSLGEHICWSEKVEKIIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259203; iTF_00200197; iTF_00260061;
90% Identity: iTF_00259203;
80% Identity: -