Arep020663.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421244.1:3984306-3987192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.8 6.2e+02 1.8 0.4 1 10 28 37 28 42 0.87 2 20 9.2 7.3e+02 1.6 0.4 11 22 54 65 54 65 0.89 3 20 0.036 2.8 9.2 0.1 2 23 78 100 77 100 0.93 4 20 0.00043 0.035 15.2 2.7 2 23 124 145 123 145 0.97 5 20 0.021 1.7 9.9 0.5 2 23 149 170 148 170 0.96 6 20 0.027 2.1 9.6 3.4 1 23 175 198 175 198 0.96 7 20 0.6 47 5.4 4.3 2 23 210 232 209 232 0.94 8 20 0.00035 0.028 15.5 0.3 1 23 238 261 238 261 0.96 9 20 5.3e-05 0.0042 18.1 0.9 2 23 266 287 265 287 0.96 10 20 0.00011 0.009 17.1 2.0 1 23 293 315 293 315 0.97 11 20 0.031 2.4 9.4 0.3 3 23 323 344 321 344 0.90 12 20 0.03 2.4 9.4 1.4 2 23 447 469 446 469 0.96 13 20 0.00065 0.052 14.7 6.1 1 23 492 514 492 514 0.98 14 20 0.066 5.2 8.4 0.4 2 23 519 540 518 540 0.95 15 20 0.0008 0.063 14.4 1.6 1 23 545 568 545 568 0.94 16 20 1.2 95 4.4 4.2 2 23 578 600 577 600 0.90 17 20 5e-05 0.004 18.2 2.9 1 23 606 628 606 629 0.96 18 20 1.1 90 4.5 7.0 2 21 634 653 633 655 0.94 19 20 1.2e-05 0.00097 20.1 4.8 1 23 661 683 661 683 0.96 20 20 0.00091 0.072 14.2 0.3 1 23 692 715 692 715 0.96
Sequence Information
- Coding Sequence
- ATGACGACATCAGAACGCCAAAATGCAGCCACCTTTCTGGAGTACACGACCGTTAAGCCCTTCTTTTACCAGCAGGCCAACTTCAAATGCTTCTACTGTAACGAACTTTTCCCGGAACTCCAATCAGCTTTGTTCCACACGGATTCCCACACCGTTCCGAGCAGGTCTTCTCTATTGAAGCAGCATTTACGCAAAGGCAAAAGAGTTATCAAAGTCGACATATCAGGGTTGAAATGCAGGATCTGCGAGCTAAAGTACTCGGATCTGGACGATATTCGAAACCACTTGGTATCCGCACATAAGAAGGAGTTCAACTCTGCTGGAAACGGTCTCATGGCTTACGATCTCAGCACGAAAAACGGTCTCATCTCCTGCCATAAATGCTTAAAAGGATTCAACTCTTTCTTCTTGTTGAATCGTCACATGAACGTTCATTTCAGCGTAGTCTGCGAGACTTGCGGGCTGGGCTTCATGTCCCACCAACGTCTTACCAACCATAGAATCGTCCATGAAAACGGTACCCACAAATGCGAGAAATGCCTCGAAGTTTTCCCCACAAAACTCAAACTACGCTACCATATCTTCAAAAAGCATGAAGTCACAAACGTCAAGAAGCTGAAGCCACTTAAATGCCCTCATTGCTTAGAACGGTTCTCGGAGCATTACAAGAAGATGACGCACTTGAAGCAAGCTCACGGAATCGCCTTTACTTTTGAATGCCCAACGTGCAAAGCTGTTTTCCCGACTAGAAGAGCGTTGACTGAACATACAACAAAGCTTCACACACGCAAAATCGAATGCAATGTCTGTGGGAAATGTTTTGGGACGACAACATTGCTCAAAATGCACGTAAGGGGACACACGGGGGAACGAAATTTCTTCTGCTCTGTATGTGACAAGGCATACATGCACGAAAGGACGTTGCGACAGCACATAAGAGTCCACGGCCCGGTCTGGAAGGTTACGTGCATAGAATGTGGCAACGGGTTCCAGAATAAAAGCGATTATTCTAAGCATATGACACAGTGGCATCCCGAGTGGCGCGGTGCCGCTGCAGGACAAAAAGCCGAGGACCCCAAGCAGCGCGAAGTCACCAGTCTCTGGGAGCTGACGCTCTCCGAACGCACCAACGCCGCCCGCTTCGTCGAGCTCACCACCGCCCGGCCTTTCGTCTACTGCCGCTACTACTTCAAATGCTTCTTCTGCCAGGAACACCATTCCGACATCAAGAAACTTCTGGAACACACCTCTACGCACGACATACCAGAGCAAGCCAAAATCTTGAAGGAGCTACTGAAGAAAGGCAGAAGAACTTTGAAGGTCGATATTTCGCAGCTGCAGTGCCGAATTtgcttaaaacattttattgaattgGACTCTATGAGACAGCATTTGACTACAGACCATGATATAGCATTTACTCAGTCAGGAAACGGGGTCGTAGCTTACAATTTAGCGACTCAGAACGAGCTGTTCTGCTGCCACATCTGCTCTAAAAAGTTCCAAACGTTCATTCTCCTAAACAGACATATGAATGTACATTTCAGTAACTCCGTCTGCGAAGTATGCGGTGCTGGTTTTATGACGCATCAGAGACTGATGCAGCACAAAGAAATCCACCAGCCAGGTGGACATCCTTGTGAAAGATGCAGCAAAGTCTACACAACCAGTTCCAACCTAAAATTCCACATAGAAAAGGCCCACGAAGGCAATAGAAAGACTAGAATGTTACGCTGTCCCCATTGCAGCGAACGATTCACCGAGCATTTCAGAAAGCTGAAACATTTGAAAGAAGTCCACGGCATCACATTCACTTATGAATGCGATGTGTGTAAGTTAACATTCTCGAGCAGACGAGCGTTAACAACGCACACGAACAGGCACCATTCGTCTAAAACCCAATGTGGAGTGTGTAAAAAATGCTTTAGCTGCGTAACGGCGCTAAAAGTGCATATGCGTTGTCATTCCAGTGAAAGGGACTATCTTTGCGAGATCTGCCAAAAGTCTTACAGACATAAGAAGAGTTTGAAATATCACATGAGAAGCCACACGAGCGGTGACCAGTTGATCAAGTTTACCTGTCCAGAGTGTAGCTCCGGGTTTCCTAATCGGAATGACTTTAATAAACATGTGAAGGAGTGGCATCCGAGCAGCTACTTCGACTTTGTAGTCCATTGA
- Protein Sequence
- MTTSERQNAATFLEYTTVKPFFYQQANFKCFYCNELFPELQSALFHTDSHTVPSRSSLLKQHLRKGKRVIKVDISGLKCRICELKYSDLDDIRNHLVSAHKKEFNSAGNGLMAYDLSTKNGLISCHKCLKGFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLTNHRIVHENGTHKCEKCLEVFPTKLKLRYHIFKKHEVTNVKKLKPLKCPHCLERFSEHYKKMTHLKQAHGIAFTFECPTCKAVFPTRRALTEHTTKLHTRKIECNVCGKCFGTTTLLKMHVRGHTGERNFFCSVCDKAYMHERTLRQHIRVHGPVWKVTCIECGNGFQNKSDYSKHMTQWHPEWRGAAAGQKAEDPKQREVTSLWELTLSERTNAARFVELTTARPFVYCRYYFKCFFCQEHHSDIKKLLEHTSTHDIPEQAKILKELLKKGRRTLKVDISQLQCRICLKHFIELDSMRQHLTTDHDIAFTQSGNGVVAYNLATQNELFCCHICSKKFQTFILLNRHMNVHFSNSVCEVCGAGFMTHQRLMQHKEIHQPGGHPCERCSKVYTTSSNLKFHIEKAHEGNRKTRMLRCPHCSERFTEHFRKLKHLKEVHGITFTYECDVCKLTFSSRRALTTHTNRHHSSKTQCGVCKKCFSCVTALKVHMRCHSSERDYLCEICQKSYRHKKSLKYHMRSHTSGDQLIKFTCPECSSGFPNRNDFNKHVKEWHPSSYFDFVVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00034023; iTF_00926844;
- 90% Identity
- -
- 80% Identity
- -