Amar017803.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- znf423
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000192.1:222229-225798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 6.4 7.8 1.1 1 23 28 50 28 50 0.82 2 19 0.0041 0.25 12.2 0.2 2 23 78 100 77 100 0.96 3 19 9.7e-05 0.0057 17.4 3.3 2 23 124 145 123 145 0.97 4 19 0.33 20 6.2 1.1 2 23 149 170 148 170 0.90 5 19 0.033 1.9 9.4 1.9 1 23 175 198 175 198 0.96 6 19 0.26 16 6.6 3.3 2 23 210 232 209 232 0.94 7 19 0.0011 0.065 14.1 0.5 1 23 238 261 238 261 0.96 8 19 0.00014 0.0085 16.8 0.8 2 23 266 287 265 287 0.96 9 19 8e-05 0.0047 17.6 3.6 1 23 293 315 293 315 0.97 10 19 0.00073 0.043 14.6 0.5 2 23 322 344 321 344 0.93 11 19 0.0036 0.22 12.4 0.2 2 23 451 473 450 473 0.92 12 19 0.00027 0.016 16.0 6.1 1 23 496 518 496 518 0.98 13 19 0.071 4.2 8.4 0.4 2 23 523 544 522 544 0.95 14 19 0.00015 0.0091 16.8 0.6 1 23 549 572 549 572 0.95 15 19 1.3 77 4.4 4.2 2 23 582 604 581 604 0.90 16 19 9.2e-05 0.0055 17.4 0.6 1 23 610 633 610 633 0.97 17 19 2.5 1.5e+02 3.5 7.2 2 21 638 657 637 659 0.93 18 19 1.3e-05 0.00077 20.1 4.4 1 23 665 687 665 687 0.96 19 19 0.00021 0.012 16.3 0.3 1 23 696 719 696 719 0.96
Sequence Information
- Coding Sequence
- ATGACGGTCTCAGAACGGCAGAATGCTGCCACCTTCCTGGAGTACACGACCATCATGCCCTTTTTCTACCAGCAGGCTAACTTCAAATGCTTCTATTGCAACAAAATGTTCCCTGAAGTCCAATCAGTCCTGTACCATACAGGTTCTCACACCATTCCAAATAGACCCTCACTATTGAAACAGTATCTACGTAAAGGCAAGAGAGCGATCAAAGTCGATATATCAGAGCTAAAATGCAGGATCTGCGAGCTAAAGTATTCAGACCTGGACGATATACGAAAGCACTTGATAACTGTCCACAAAAAGGAGTTCAACTCGGCTGGAAATGGTCTCATCGCTTACGATCTTAGCATGAAAAACGGCCTCATGTCATGCCACAAATGTTCGAAACCATTCAACTCTTTCTTCTTGCTGAATAGGCATATGAACGTTCATTTTAGCGTGGTCTGCGAAACTTGCGGACTGGGCTTCATGTCTCATCAACGGCTCGTCCACCATAAGGTCGTCCACGAAAACGGAATGCACACATGCGTGAAATGCCTTGAAGTCTTCCCCACAAAGCTAAAGTTACGCTACCACATCATTAAAAAGCATGAAATCACAAACGTGAAGAAGTTAAAGCCTCTCAAATGCCCCCATTGCTTAGAAAGGTTCTCAGAGCATTACAAAAAGATGGCACATTTGAAGCAGGCTCACGGTATCGCCTTCACATTCGAGTGTTCAACTTGCAAAGCTGTCTTCCCGACTAGGAGAGCGTTAACCGAACATACAACAAAGCTTCACACACGCAAAATCGAGTGTCGAGTTTGCGGGAAATGTTTTGGAACGACAACGCTGCTTAAAATACACGTAAGAGGGCATACTGGAGAGCGAAATTTCTTCTGCTCTGATTGTAACAAGGCATATATGCATGAGAGGACTTTGCGACGCCACATGAGAGAGCACGGCCCTGTCTGGAAGATCACTTGCTCGGAATGTGGCAACGGATTCCAGAATAAAAGTGATTATACTAAGCATTTGACGCAGGGGCATCCTGATAGGCGCAGTACTGCTCCAGTTGGAATTAACGGTCAAAGGCCCGAGGACGGCAAGCAGCGCGAGGTCACCAGCCTCTGGGAGCTGACTCTCTCCGAGCGCACCAACGCCGCTCGCTTCGTCGAACTGACCACGGCGAGACCCTTCGTCTACTGCCGCTATTACTTCAAATGCTTCTTCTGCCACGAGCACCATTCCGACATCAAGAAACTGTTGGCGCACACCTCCACGCACGATGTCCCAGAACAAGCCAAAATCTTGAAAGAACTACTTAAAAAGGGCAGAAGAACATTAAAAGTCGACATTTCGCAACTAAAATGTCGAATTTGCTCGAAAGATTTTACTGATTTGGACTCGATAAGGCAGCATTTAATTGCAGATCATGGCACAGTGTTCACGCAATCCGGCAACGGAGTGGTAGTTTACAATTTGGCGACAAAAAACGAGCTGTTTTGCTGTCATATATGCAATAAAAAGTTCCAGACGTTTATCCTTCTAAACAGGCATATGAACGTCCATTTTAGTAATTCAGTTTGCGAAGTCTGCGGCGCTGGTTTCATGACGCATCAGCGATTGATGCAGCACAAAGAAATCCACCAACCGGGTGGATATCCCTGCGGCAGATGCAATAAAGTGTATACAACAAATTCGAACTTAAAATTCCACATAGAAAAGGCCCATGAGGGCAACAGGAAGACGCGAATGTTGCGATGTCCACACTGCAGTGAACGGTTCACAGAACACTTTAGAAAGTTGAAACATTTGAAAGAAATCCACGATATAACATTCACGTATGAATGCGATGTTTGCAAATTAACATTTCCAAGCAGAAGAGCTCTAACGACACACACTAATAGGCTGCATTCGTCTAAAACTCAGTGCGAAGTGTGTAAAAAATGCTTTAGCTGTGTCACCGCTTTGAAAGTCCACTTGCGCTGTCATTCAAGTGAAAGGCACTACCTTTGCGAGATTTGCCAGAAGTCTTACAGGCATAAGAAAAGCCTGAATTATCATATGAGGAGTCATGTAAGCGGTGATCAGATGGTTAAGTTTACTTGTCCAGAGTGCAGCAGTGGATTCCCAAATCGGAGCGACTTTAATAAGCATGTGAAAGAGTGGCATCCAAGCAGCTATTTTGACTTCGTTGTTCACTGA
- Protein Sequence
- MTVSERQNAATFLEYTTIMPFFYQQANFKCFYCNKMFPEVQSVLYHTGSHTIPNRPSLLKQYLRKGKRAIKVDISELKCRICELKYSDLDDIRKHLITVHKKEFNSAGNGLIAYDLSMKNGLMSCHKCSKPFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLVHHKVVHENGMHTCVKCLEVFPTKLKLRYHIIKKHEITNVKKLKPLKCPHCLERFSEHYKKMAHLKQAHGIAFTFECSTCKAVFPTRRALTEHTTKLHTRKIECRVCGKCFGTTTLLKIHVRGHTGERNFFCSDCNKAYMHERTLRRHMREHGPVWKITCSECGNGFQNKSDYTKHLTQGHPDRRSTAPVGINGQRPEDGKQREVTSLWELTLSERTNAARFVELTTARPFVYCRYYFKCFFCHEHHSDIKKLLAHTSTHDVPEQAKILKELLKKGRRTLKVDISQLKCRICSKDFTDLDSIRQHLIADHGTVFTQSGNGVVVYNLATKNELFCCHICNKKFQTFILLNRHMNVHFSNSVCEVCGAGFMTHQRLMQHKEIHQPGGYPCGRCNKVYTTNSNLKFHIEKAHEGNRKTRMLRCPHCSERFTEHFRKLKHLKEIHDITFTYECDVCKLTFPSRRALTTHTNRLHSSKTQCEVCKKCFSCVTALKVHLRCHSSERHYLCEICQKSYRHKKSLNYHMRSHVSGDQMVKFTCPECSSGFPNRSDFNKHVKEWHPSSYFDFVVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044748;
- 90% Identity
- -
- 80% Identity
- -