Arep017616.2
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- sip1
- Assembly
- GCA_949125135.1
- Location
- OX421240.1:4399260-4407293[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-36 3.5e-32 112.8 0.1 4 176 372 531 369 556 0.89 2 3 2e-05 0.2 11.9 0.0 141 175 594 624 586 656 0.73 3 3 1e-28 9.9e-25 88.3 0.1 142 275 695 825 687 825 0.93
Sequence Information
- Coding Sequence
- ATGTCCGACGATGAGGTTATACGTTTCGAAATCACTGACCACGACTTGGAAAATGAATTCAACTTTACTAGGAATCGGAAAGCAAAAAAGGAACACCAAATCTACGgTATGTGGGCCAAAGACAGTGACGAAGAGGACAATGAAGATAATGTTCGGCAAAGGACTCGCAAACCCAAAGACTTTTCAGCACCCATTGGTTTTGTGGCGGGCGGGGTACAACAGGCTGGcaagaaaaaagaagagaaaaaagCTAAAGAACTAGAAAGTACAGAAGCTTCCACATCTCGGCCTAAATTTGCGCCGGACAGTTCGGACGAAGATGATCAACCAACCAACCCTGATGAGAGTGAGACGGCAGGCATCAGGCGAAAGGGACAGGGCATGCGCTCTGCCAACATTGGAGGCAATATGGGGACATGGGAAAAACATACTAAAGGGATTGGTGCCAAGTTGCTTTTGCAGATGGGGTACCAACCCGGCAAAGGTTTGGGCAAGGACTTGCAAGGTATATCGGCGCCCGTGGAGGCCAGCGTGAGGAGAGGCAGAGGTGCTATTGGCGCTTATGGCCCTGAGAAAGCAGCGCAAAAAGCcaaaagagaagaagaaaaacGCCTGAAAGAGAAAGAAGAACAAGAGAAGGACTCGACAGAGAAAACATACAACTGGAAGAAATCCCACAAAGGGCGATATTTTTACCGAGACGCGGCTGACGTCATACAAGAGGGTAAACCTACGATGCACACTGTGGCTAGTAACGAGCTATCCCGCGTACCAGTCATCGACATGACGGGCAAAGAAAAGCGCGTACTGAGCGGGTACCACGCgctgcgcgccgccgcgccgcgcttcGAGCACGAGCCGCGGCGCCGCTGCGAGCACTTCGCGGCGCCCGAGCTGGCCCACAACCTGGCGCTCGTCGTCGACTGCTGCGAACAGGACATAATCCAAAACGCGCGCGAACTTCAAGCCGCTGAGGACGAGATAGTCGTATTAGAACGAGATTTAGAAGAGTGCAACATGAAGTTAGAAGAGCACGACGTGGTGGTAGGAAAGGTGGAGTCTATACTGGAGAGAGTTGAGGAGCTAAACAAGCCGGATATATCGCTAGAGGCTGCATATGAAGTGCTGGCAGATTTGCAGGAAGCTTACCCACTAGAGTACGAAATGTTTGGCCTCAGTACCATAGCTGGCAACATTGTTAGCCCGCTACTCAGCGCGCTGCTAGCGACCTGGCAACCCTTGGAGGCGCCTGAAGACCCCATACCTACCTTCTTGAAATGGAGGAAACTGTTGTCCGAAGAGGCGTACAACAGTTTACTGTGGCAACACTACGTACCGCACATAACTACTGCGGCTGAAGACTGGAACCCCCGCGAGCCGGCGGCCATGGTCCGCGCGCTGGGCGCGTGGGCGGCCGCCTGCCCGGGCTGGCTGGCGCGGCAGGTGGCGGCGCGCTGCGTGGTGCCGCGCCtgctggcggcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCCgcaccggcgcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCCgcaccggcgcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCAgcaccggcgcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCAgcaccggcgcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCAGCACCGGCGCGGCGCACGGGTGGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGTACGTACACTCGTCCgcaccggcgcggcgcgcgggtgGGACCCCACGCACGACACGCAGCCCGTGCACTGCTGGGTGCTGCCCTGGCACGAGCTCGCCGGCGAGGCGCTGTCCACGGCGGTGTACCCGCTGATCCGCTCCCGGCTGGCGAGCGCGCTGGCGGCGTGGCACCCGGCGGACGGGTCGGCGCGCGGCGTGCTGGGCGCGTGGCGCGGCGCGTGGGGCGCGGCGCTGACGGCGCTGCTGCACCACCACATCGTGCCCAAGCTGGAGCACTGCCTGCACCACTCGCCGCTCGAGCTCGTCGGCAGGGAGAACACGGCGTGGCTGTGGTGCGTGGAGTGGCTGGACCTGCTGGGCGCCCCCACGGTGGGCGCGCTGGCCTCGCGCGCGCTGCTGCCGCGCTggctggcggcgctggcggccTGGCTCAACACCAACCCGCCGCACAGCACCGTGCTCAACTCCTACACCGACTTCAAGAAAATGTTCCCTGAAGAAGTATTAAAAGAGCCCGGCGTCCGCGACGCGTTCCGCAAGGCTCTGGACATGATGAACCGCAGCACCGACATCGACCTGGTGgagcccccgccgccgccgcgctacGCCCCCGTCGCGCCCACGCTCGAGGCTAAGGACACTTTACGGATTGCTGATGCTTTGGCTTCGGCCACACAACAGAAGAGCTTCTCCGAGCTACTGGAATCGAGGTGTAGCATGAAAGGCATAACCTTCGTCCCCATGGCAGGGAAGACCAGGGAAGGCAGACCTATCTACAAGATCGGAGACCTACAGTGCTATGTGATTAGAAACGTTATAATGTACTCGAATGATGGCGGACGGAACTTTACGCCTATTAGTATAGACAGACTGTTGAAGCTTGTCGAAGATTGA
- Protein Sequence
- MSDDEVIRFEITDHDLENEFNFTRNRKAKKEHQIYGMWAKDSDEEDNEDNVRQRTRKPKDFSAPIGFVAGGVQQAGKKKEEKKAKELESTEASTSRPKFAPDSSDEDDQPTNPDESETAGIRRKGQGMRSANIGGNMGTWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEASVRRGRGAIGAYGPEKAAQKAKREEEKRLKEKEEQEKDSTEKTYNWKKSHKGRYFYRDAADVIQEGKPTMHTVASNELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRRCEHFAAPELAHNLALVVDCCEQDIIQNARELQAAEDEIVVLERDLEECNMKLEEHDVVVGKVESILERVEELNKPDISLEAAYEVLADLQEAYPLEYEMFGLSTIAGNIVSPLLSALLATWQPLEAPEDPIPTFLKWRKLLSEEAYNSLLWQHYVPHITTAAEDWNPREPAAMVRALGAWAAACPGWLARQVAARCVVPRLLAAARGWDPTHDTQPVHCWVLPWHELAGTYTRPHRRGARVGPHARHAARALLGAALARARRYVHSSAPARRAGGTPRTTRSPCTAGCCPGTSSPVRTLVSTGAARGWDPTHDTQPVHCWVLPWHELAGTYTRQHRRGARVGPHARHAARALLGAALARARRYVHSSAPARRTGGTPRTTRSPCTAGCCPGTSSPVRTLVRTGAARGWDPTHDTQPVHCWVLPWHELAGEALSTAVYPLIRSRLASALAAWHPADGSARGVLGAWRGAWGAALTALLHHHIVPKLEHCLHHSPLELVGRENTAWLWCVEWLDLLGAPTVGALASRALLPRWLAALAAWLNTNPPHSTVLNSYTDFKKMFPEEVLKEPGVRDAFRKALDMMNRSTDIDLVEPPPPPRYAPVAPTLEAKDTLRIADALASATQQKSFSELLESRCSMKGITFVPMAGKTREGRPIYKIGDLQCYVIRNVIMYSNDGGRNFTPISIDRLLKLVED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -