Arep009440.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- clz9
- Assembly
- GCA_949125135.1
- Location
- OX421230.1:3319031-3326425[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 1.2e-05 25.6 0.0 1 39 14 53 14 57 0.89
Sequence Information
- Coding Sequence
- ATGCCaaacaaatatgtaaaaaaaaaagcaccGACATATACCGAAGACGACATCAACAATGCAGTTTTGGAAGTCGAAACTAATGTATTATCAATGTATGCTGCAGCAAAAAAGTACGGTATACCAACGACAACTCTCTacgacaaaattaaaaatacttacagcACAAATGTTGTGGGTAGACGGTTAGCTATTCCGCTGGAAATAGAAAATCGACTGGCCGACGCAATTAAAACAATGGAAAAGTGGGGATTTGGTCTTTCCAGGGAAGAAGTGTTAAGCATAGTTGAGGAGTTTGTCAAACGCAATAATATAGACACCCCATTTACAAACAACAAACCGGGAAAAGACTGgtttattaattttagaaaaaggCATAGACTTTCCATTAAAAAAGCACAGCCTGTGGAATACGTCCGAAAAAAGATGACGGATCCCTTCGTAATATTGGATTATTTTAAACTGCTGGAGGATACATTGACagctttaaatttaaatgaaagtCCACATTTGATTTGGAATATGGACGAAACATCGCTGTCTCTTGACCCAACAAGAACAAAAGTGGTTGGAGCCATAAATAAGCCATGTTCCAGAACCACATGTGGCACTGGCAAAGAAAATATAACCGTTCTGACAACCGTAAGTGCCGCAGGCCAAAAGATATCACCTTTAATCGTATTTAAAGGTAAAAATGTGTGGGACCAATGGATGGCTCCAACTGAAAATTACGATTTTGAGCTATCGTATGCAGCAAGTTCCAAAGGCTGGATGGAGACTGAAATCTTCTACAATTACATGGAGAAAATTTTGATTCCAGCTCTAGGAGGAGAACGTCCCGCGCTTATCATTTACGATGGTCATTCTACACACGTAGATACAAATGTTATAGAgttggcaaaaaaaaatgaCGTAACTATTCTCAAGCTGCCTCCACACACGTCCCACTTGCTGCAGCCGCTCGATGTCTCGGTATTCAAATCGTTCAAAACCAAATGGGACGGCAAATTAGTTGAATGGCAACGCCACAATGTTGGTATCAAGATGCCTAAAAACATATTTGCCCAAACTTTTGCTGAAACTTGGCAAGAAACTAGCCCGGACGTGATTAAAAGCGGGTTCAAAAAAACTGGGATTTACCCGTTTGATTCTAGAGTAATACCAGAAGAAAAATACGATCCTGCTGCCTACAGAAGATATATAGAAGCAAAAAATGCTGAATCTTCTCGTTCACAGAGGCAGTTGAGCCCAAATTGCGATTCGAAAAGCGCGGGAAAGCGCCCCCGGCGTGTGCTCGGCGGAGTTTTTCAGGCGGACTGGAGGGCGGCGCGGCTGAATGGAAGACGCGACGCGAGCCGCATCCACGGTCATGCGCGTTCATGTTAG
- Protein Sequence
- MPNKYVKKKAPTYTEDDINNAVLEVETNVLSMYAAAKKYGIPTTTLYDKIKNTYSTNVVGRRLAIPLEIENRLADAIKTMEKWGFGLSREEVLSIVEEFVKRNNIDTPFTNNKPGKDWFINFRKRHRLSIKKAQPVEYVRKKMTDPFVILDYFKLLEDTLTALNLNESPHLIWNMDETSLSLDPTRTKVVGAINKPCSRTTCGTGKENITVLTTVSAAGQKISPLIVFKGKNVWDQWMAPTENYDFELSYAASSKGWMETEIFYNYMEKILIPALGGERPALIIYDGHSTHVDTNVIELAKKNDVTILKLPPHTSHLLQPLDVSVFKSFKTKWDGKLVEWQRHNVGIKMPKNIFAQTFAETWQETSPDVIKSGFKKTGIYPFDSRVIPEEKYDPAAYRRYIEAKNAESSRSQRQLSPNCDSKSAGKRPRRVLGGVFQADWRAARLNGRRDASRIHGHARSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055362; iTF_01264463; iTF_00035579;
- 90% Identity
- -
- 80% Identity
- -