Astr020602.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- clz9
- Assembly
- GCA_950108535.1
- Location
- OX467317.1:4292326-4298895[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-10 2.7e-07 31.2 0.0 3 43 24 64 22 65 0.88 2 2 4 3.7e+03 -1.3 0.0 7 17 142 151 141 152 0.82
Sequence Information
- Coding Sequence
- atggcaatacgaaagtcagAAATATGTCTAATAAATACATtaagaaagaaaaagacaaaatacACACAAGAAGATGTAATAACTGCAGTCAGAGAAGTGAAAGAGAAGGGGTTGTCAATGCACGCTGCAGCTAAAAAGTACGGAATTCCCCCAACTACTCTCTTTGacagaataaaagaaaaatacagcACGAATGTTGTAGGCAGACGGTTAGCTATTCCGTGGGAAGAAGAAAGTCGATTGGCCGAAACTATTAGAACAATGGAAAAGTGGGGGTTTGGCCTTTCCAGAAAGGAAGTCTTAGATCTAGTTGCTGAGTTCGTAAAAAGCAATAACTTGGTTACTCCCTTTACAAATAATCAACCGGGCAAAGACTGGTTTATAAATTTTCGAAAAAGGCACAGACTTTCCATTAAAAAATCACAGGCAGTAGAATACGTTAGGAAGAAAATGACGGACCCTATTATAATAACCAACTATTTCAAACTACTACAGGATACATTGACTGATTTAAATCTATTTGAAAGACCACATTTGATTTGGAATTTAGACGAGACATCGTTGTCTCTTGACCCAACAAGGACAAAAGTTGTTGGCGCTATCAATAAACCATGTTCCAGTACAACATGTGGAACTGGAAAAGAAAACGTCACTGTACTAACAACTGTAAGTGCCGCTGGAGACAAAGTATCACCTTTAATtgtatttaaaggaaaaaacgTGTCGGACCAGTGGATGGCCTCAACAGAAAATTACGATTTTGAGCTCTCATACGCAGCTAGTTCAAAAGGCTGGATGgagaccaacattttttacaactattttgaaaaaaaaatacttccagCTCTAGGTGAAGAACGTCCTGTTCTAATGATTTACGACGGGCATTCCACACACGTAGACGCCAAAGTTATAGAGTTGGCCACGAAAAACGATGTTACGATTCTTAAGCTGCCTCCTCACACTTCCCATTTGTTGCAGCCTCTCGATGTTGCAGTTTTTAAATCGTTCAAGACCAAATGGGATGCTAAATTAGTTGACTGGCAGCGCCATAATGTCGGTACAAAAATTCctaaaaacatttttgcccaaactTTTGCAGAAACTTGGGACGAAACTAACCCGGCTGTGATTAAAAGTGGTTTCAAGAAAGCTGGAATTCACCCATTTGATTCTCAAGTGATACCGGAAGATTGA
- Protein Sequence
- MAIRKSEICLINTLRKKKTKYTQEDVITAVREVKEKGLSMHAAAKKYGIPPTTLFDRIKEKYSTNVVGRRLAIPWEEESRLAETIRTMEKWGFGLSRKEVLDLVAEFVKSNNLVTPFTNNQPGKDWFINFRKRHRLSIKKSQAVEYVRKKMTDPIIITNYFKLLQDTLTDLNLFERPHLIWNLDETSLSLDPTRTKVVGAINKPCSSTTCGTGKENVTVLTTVSAAGDKVSPLIVFKGKNVSDQWMASTENYDFELSYAASSKGWMETNIFYNYFEKKILPALGEERPVLMIYDGHSTHVDAKVIELATKNDVTILKLPPHTSHLLQPLDVAVFKSFKTKWDAKLVDWQRHNVGTKIPKNIFAQTFAETWDETNPAVIKSGFKKAGIHPFDSQVIPED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044438;
- 90% Identity
- -
- 80% Identity
- -