Arep003678.1
Basic Information
- Insect
- Alcis repandata
- Gene Symbol
- -
- Assembly
- GCA_949125135.1
- Location
- OX421224.1:3366781-3367278[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-14 1.5e-11 44.5 0.2 1 42 15 57 15 58 0.92
Sequence Information
- Coding Sequence
- atggtaCGGAGATACGAAAGAATGAGTGGACGACAGTCATGGAGCGAAGAAGACATGGCGAAAGCGGTCGCCGCCGTCGTGTCAGGCAAGATGGGATACAAGCTAGCAGCCCGTACCTTTCACATCCCGCGCTCTACATTACAGCGGCGCGCCAGCAAAGTCCGCTACCAGCAACCAGACGACGCCAAGCCGCTCATGGGACATTACAGGCGAGTCTTCACCGACGACCAGGAGAAAGACCTAGTCGGATACATAAAGAGCATGGAAAAATACTTCATGGGCGTCTCCCGGCGAGACATTCGAGAGCTCGCGTTCCAGTATGCGGAGGACAACCACCTGAACCACCCGTTCGATGTGAACAGCCGCATGGCCGGCGAGGACTGGGTCAGGAACTTCCTCAAGCGGAACCCTGAGCTGCTGGACCGGTCGGACCACGAGAACGGACTAGAACCGGTAAACTTTGACCAATTTTATCATTTCATGTGCCAGTTTTCTTGA
- Protein Sequence
- MVRRYERMSGRQSWSEEDMAKAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKVRYQQPDDAKPLMGHYRRVFTDDQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNHLNHPFDVNSRMAGEDWVRNFLKRNPELLDRSDHENGLEPVNFDQFYHFMCQFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00457172;
- 80% Identity
- iTF_00032831; iTF_00143008;