Aseg017169.2
Basic Information
- Insect
- Agrotis segetum
- Gene Symbol
- -
- Assembly
- GCA_036375495.1
- Location
- JAQSVV010000142.1:2490780-2499785[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 0.92 11.1 1.7 1 23 270 293 270 293 0.98 2 10 0.00077 0.07 14.6 3.3 3 23 302 322 300 322 0.97 3 10 0.0023 0.2 13.1 0.2 2 23 358 380 357 380 0.95 4 10 0.00023 0.02 16.3 0.6 5 23 385 404 384 404 0.95 5 10 1.9e-06 0.00017 22.8 1.0 1 23 410 432 410 432 0.98 6 10 7.1 6.4e+02 2.1 0.4 2 20 442 460 442 462 0.89 7 10 1.8e-05 0.0016 19.7 3.2 1 23 470 493 470 493 0.94 8 10 0.0027 0.24 12.9 2.6 1 23 499 522 499 522 0.96 9 10 3.3e-05 0.003 18.9 3.7 1 23 530 552 530 552 0.97 10 10 4.1e-05 0.0037 18.6 0.1 1 23 558 581 558 581 0.96
Sequence Information
- Coding Sequence
- atggaAGAACCGCTTAATCTATGCCTGACATGTCTAAGTACGGATCGCTGCCTTGTTCCTTTGCACAAAATAAGAACATTACTACAGAAAATACATTTTGACGAGCTAAAAACATTTCATGGTGGAGTATGTTGGGAGTGTTGGAGTATCCTGATAAAGTTCtataaatttaagaaaaaagttaaaattgcaCAGGAGATGTTATCAACAACAACACAGCACCTTAATATTAAATCACTATCAACATTATCAtcaaaaatcaatattttatatgaCTACCAATACACATATAGCATAGATCCTTTAAACAATTGTGACACAAAATTAAAAGCTGAACCAGGAACTATAAAACAAGAAATTATAGAACAAAGTGATGATAACATAGACAATAATTCAGATTGTGATGGAAGAAAGTCAGAAATTGATGAAGAAACAGAAATTATCTATGAAGAAGCAAAATTAGatTTAGACGAAAAAGCCAACCATCCAGAGAAAATTGCcaatgaaaatgaaattaaaaacagaATTATAAACCAAAAATGTAATCAATGTTTTaatagagtcaaaattaattttgctGAAGTCACTCTCAATGAAAAACTTTGTGATATACTGACTGAAAATGTCTTTGTAGAAACTATAGAGAAAAAgcctaataataatataataaaaaagaaaactaaaaagaatttagaaagaGATGAAAGGGAGATACAAGAGAAGTTCAAGCAAGTCGTGTTATCTGAAGAAGAGATGTTAAAAGCGAGGGAAGAAAAGAGGaatcattataattttaagaAGATTCCTTATAAATGTGATAGTTGTGTGCTTGGTTTTACCAGAAAAGATACTTACAGCTTGCATGTGAAGAAAAAACACGATGAGAGCATAGGCAACGATATCTGCGATGTATGCCACATCCGTTTCCGACACAAAATGGCGCTAGAAAACCATAGGAACAAGCACTTTGTGGTGTTCAAATGTCGGTTGTGTAGATATGACACTCATGAATACACCTCGGTAGTCAATCATTGTCGGACCAAACATGTTAATGATGAACCCAATAGGATACATTGTTCACAGTGCGATATTATCGTTCAGACCCCAGAAGACTTAGAAAAACACATGCAGAGTGAACATActctattttgtgtttgtggTGTGAAATTTAAGGATAAGAGCAATCTTAGAAGTCATATTAGTCGAGCCCACTCCATACTACGCAATTTCATTTGTGATATTTGCGAGAAAACGTTTAAAACGAAAACTCGTTTAGAAACACACATGGCGACACATAATAGGAGTATTGCCAAAAAACTGGCATACTGCCAACAATGCAAAATTCAGTACAAGAACATTCAAGTTTATAGGAACCATTTGACTTCTAGTTCTAAGCATTCTGAAGGGTATCCATGTTCAGAGTGCAACAAAAAATTCAGATCAAAAGGATACTTGAAGCAGCATTACAACTTCTACCATTTGAGAAAATCTCAATACAAATGTGAAGTATGCAATAAGctATTCATATCAAACTTTCGCCTTCGTAATCACAAACAACAGTACCACGGTTTGAGCAGACCTAGGAATCATTCCTGTAGTACATGCGGCAAGAAATTTTTTTCATCGGCAACGCTTCGCAGTCACCAGTTGACGCACTCATCGCAGCGTTCGTTCATGTGCGCGGATTGTGGCGCTACGTTCAAACAAAGCGCCGCCTTGTACACACACACTCGACTTGTACACAAAAGAACTAGCACGAGGAAGAATACGTGA
- Protein Sequence
- MEEPLNLCLTCLSTDRCLVPLHKIRTLLQKIHFDELKTFHGGVCWECWSILIKFYKFKKKVKIAQEMLSTTTQHLNIKSLSTLSSKINILYDYQYTYSIDPLNNCDTKLKAEPGTIKQEIIEQSDDNIDNNSDCDGRKSEIDEETEIIYEEAKLDLDEKANHPEKIANENEIKNRIINQKCNQCFNRVKINFAEVTLNEKLCDILTENVFVETIEKKPNNNIIKKKTKKNLERDEREIQEKFKQVVLSEEEMLKAREEKRNHYNFKKIPYKCDSCVLGFTRKDTYSLHVKKKHDESIGNDICDVCHIRFRHKMALENHRNKHFVVFKCRLCRYDTHEYTSVVNHCRTKHVNDEPNRIHCSQCDIIVQTPEDLEKHMQSEHTLFCVCGVKFKDKSNLRSHISRAHSILRNFICDICEKTFKTKTRLETHMATHNRSIAKKLAYCQQCKIQYKNIQVYRNHLTSSSKHSEGYPCSECNKKFRSKGYLKQHYNFYHLRKSQYKCEVCNKLFISNFRLRNHKQQYHGLSRPRNHSCSTCGKKFFSSATLRSHQLTHSSQRSFMCADCGATFKQSAALYTHTRLVHKRTSTRKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042934;
- 90% Identity
- -
- 80% Identity
- -