Aput006892.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000260.1:206131-214788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0015 0.098 13.4 2.1 1 23 294 317 294 317 0.98 2 10 0.0012 0.082 13.7 3.9 3 23 326 346 325 346 0.97 3 10 0.016 1.1 10.2 0.1 2 23 382 404 381 404 0.95 4 10 0.00019 0.013 16.2 0.6 5 23 409 428 408 428 0.95 5 10 1.6e-06 0.00011 22.7 1.0 1 23 434 456 434 456 0.98 6 10 5.1 3.4e+02 2.3 0.3 2 20 466 484 466 486 0.87 7 10 5.1e-05 0.0034 18.0 3.4 1 23 494 517 494 517 0.92 8 10 0.002 0.13 13.0 2.3 1 23 523 546 523 546 0.96 9 10 1.3e-05 0.0009 19.8 2.8 1 23 554 576 554 576 0.97 10 10 3.5e-05 0.0023 18.5 0.1 1 23 582 605 582 605 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAACCGATTAATATATGCCTGACATGTTTAAGTACGGATCGCTGCCTTGTTCCTTTGCATAAAATAAAAATATTACTACAGAAAATACATTTAGATGTGATGAAAACATCTCATGGCGGAGTATGTTGGGAATGTTGGAGTATCGTGGTGAAGTTTTATAAATTTAAGAAAAAAGCCAAGATAGCGCAGGACATTTTATCAAAAACAACTCAGCACCCCAAATTTAGATCGCTATCAACATTATCGTCTAAAATCAATATTTTATATGACTACCAATACAAGTATAGCATAGACCCTTTAAACAGTTGCGACACAAAATTAAAAGGTGAACCAGAAACTATAAAGCAAGAAATCAAAGACCAAAGTGATGATAACATAGACTTAAATTCAGATTTTGATGAAAGAAAGTCTAAAATTGATGAAGAAACAGAAAATATCTACGAAGATATATTAGAAACAAAATTAGGTAATAATTTATTGAGAAAACAAGAAATTCTAGACCAATGTAATTGTGGTGTGACTGACAAAATTTCATATTTAGACGAATTTACAAACATTCCAGAAAAAGTTGAAAGTGAAAATGAGAACAAATTAAAAAAACAAAAATGTTTACAATGTGTTAACAAAGTCAAAATTAATTTTGCCGAAGTCACTCTCAATGAAAAACTTAGTCAAATACTGACTGAAAATGTCTTTGTTGAAACCATAGAGAAAATACCTAATAAAAAAATTATTAGAAAGAAAACTAAAAAGAATTTAGAAAGAGATGAAATAAAGATACAAGAGAAGTTCATGCAAGTTGTGTTGACTGAAGAAGAGTTGCTTAAAGTGAGAGAAGAAAAGAGAAATCATTATAATTTTAAGAAGATTCCTTATAAATGTGATAGTTGTGTACTTGGGTTTACTAGAAAAGATACTTATAGCTTGCATATGAAGAAAAAGCATGATGAGAGCATAGGCGACGAAATCTGCGACGTATGCCACATCCGTTTCCGTCATAAAATGGCGCTAGAAAACCATAGGAACAAGCACTTTATGGTGTTCAAATGTCGATTGTGTAAATATGAAACTCATGAATACACATCTGTGGTCAATCATTGTCGAAGCAAACATGTTAATGACGAACCTAATCAGATACACTGTTCACAATGTGACATTGTCGTACAGGCCCCAGAAGAATTAGAAAAACACATGCAGAGTGAACACACCCTATTTTGTGTTTGTGGTGTGAAATTTAAGGATAAGAGCAATCTCAGAAGTCATATTAGCCGAGCCCACTCCATACTACGAAACTTCATCTGTGACATTTGCGAGAAAACGTTTAAAACGAAGACTCGTTTAGAAACTCACATGGCGACACATAACGGAAGTATTGCAAAGAAACTGGCATATTGTCAACAGTGCAACATTCAGTACAAGAACATACAAGTTTATAGGAGCCATTTGACATCGAGTTCTAAACATTCCGAAGGGTATCCATGTTCAGAGTGCAACAAGAAATTCAGATCAAAAGGATACTTGAAGCAGCATTTTAACTTCTACCATTTGAGAAAATCTCAATACCAATGTGAAGTATGCAATAAGCTGTTCATATCAAATTTTCGCCTTCGTAATCATAAACAACAGTACCACGGCCTGAGCAGACCTAGGAATCATTCATGTGGTACATGCGGCAAGAAATTTTATTCATCAGGAACGCTCCGCAGTCACCAGCTGACGCACTCATCGCAACGTTCGTTCATGTGCGCGGACTGTGGCGCTACATTTAAACAGAGCGCCGCCCTGTACACGCACACGAGGCTCGTGCACAAACGTGCTGGCACGCGGAAGAATACGTGA
- Protein Sequence
- MEEPINICLTCLSTDRCLVPLHKIKILLQKIHLDVMKTSHGGVCWECWSIVVKFYKFKKKAKIAQDILSKTTQHPKFRSLSTLSSKINILYDYQYKYSIDPLNSCDTKLKGEPETIKQEIKDQSDDNIDLNSDFDERKSKIDEETENIYEDILETKLGNNLLRKQEILDQCNCGVTDKISYLDEFTNIPEKVESENENKLKKQKCLQCVNKVKINFAEVTLNEKLSQILTENVFVETIEKIPNKKIIRKKTKKNLERDEIKIQEKFMQVVLTEEELLKVREEKRNHYNFKKIPYKCDSCVLGFTRKDTYSLHMKKKHDESIGDEICDVCHIRFRHKMALENHRNKHFMVFKCRLCKYETHEYTSVVNHCRSKHVNDEPNQIHCSQCDIVVQAPEELEKHMQSEHTLFCVCGVKFKDKSNLRSHISRAHSILRNFICDICEKTFKTKTRLETHMATHNGSIAKKLAYCQQCNIQYKNIQVYRSHLTSSSKHSEGYPCSECNKKFRSKGYLKQHFNFYHLRKSQYQCEVCNKLFISNFRLRNHKQQYHGLSRPRNHSCGTCGKKFYSSGTLRSHQLTHSSQRSFMCADCGATFKQSAALYTHTRLVHKRAGTRKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00040354; iTF_00043852; iTF_00042128;
- 90% Identity
- -
- 80% Identity
- -