Basic Information

Insect: Agrotis ipsilon
Gene Symbol: -
Assembly: GCA_028554685.1
Location: CM052981.1:675348-685349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.57 57 5.4 2.9 1 23 402 424 402 424 0.95

2 9 2.4e-06 0.00024 22.3 0.9 1 23 471 494 471 494 0.97

3 9 0.00013 0.013 16.8 1.2 2 23 500 521 500 521 0.97

4 9 2.8e-05 0.0028 19.0 2.6 1 23 529 551 529 551 0.97

5 9 0.00011 0.011 17.1 1.8 1 23 556 578 556 578 0.96

6 9 0.00014 0.014 16.8 1.4 1 23 587 609 587 609 0.99

7 9 3.7e-06 0.00038 21.7 0.7 1 23 615 638 615 638 0.97

8 9 0.11 11 7.6 0.5 1 14 644 657 644 667 0.82

9 9 3.5 3.6e+02 2.9 2.0 1 23 675 698 675 698 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.57	57	5.4	2.9	1	23	402	424	402	424	0.95
2	9	2.4e-06	0.00024	22.3	0.9	1	23	471	494	471	494	0.97
3	9	0.00013	0.013	16.8	1.2	2	23	500	521	500	521	0.97
4	9	2.8e-05	0.0028	19.0	2.6	1	23	529	551	529	551	0.97
5	9	0.00011	0.011	17.1	1.8	1	23	556	578	556	578	0.96
6	9	0.00014	0.014	16.8	1.4	1	23	587	609	587	609	0.99
7	9	3.7e-06	0.00038	21.7	0.7	1	23	615	638	615	638	0.97
8	9	0.11	11	7.6	0.5	1	14	644	657	644	667	0.82
9	9	3.5	3.6e+02	2.9	2.0	1	23	675	698	675	698	0.93

Sequence Information

Coding Sequence: ATGTTGCACAATACAGGGACGTATAGTCCTAACGAGGCACCTGTAAACATGGGAGCGCCCGTTAACATGACACCAATGGGTAGTCATATGAATATCGCTcataacattaataatttgAGCAAAATAACACACCAAAGCGCCCCCGCGCCTAGCGGGCACTACAATCTCCCGGAATATGCACATTACAACCACTCTCCTATCACCATGCCACCGCAAATGACCCAATTTCCCAACTATCAACAACTGGGTTTCCAACACACTTACGTGAGTCAAAATGCAAACAATACGAATGATTTGCCATTCCCAAACGGTATGTTCCCTATGAATTTGAATATACAGAACGAGCATAACGCTAACGTAGTAAATTATGCTTACGATAAGCGTGTAATTGAGTCAGTGCGACAAGAAAACTATAAAGAGCAAAGTGCACGGAAAATGCCTTTAAATATACCTCAGATACCaaataaagtatataataaacAGAGTGGCGGTAACAACGACTATCTGCATAACAATATGTATGAAGAAACTCATAATAATCTAGATTTAAGCATGAAATCTCAAGAAAAACTTCAAATAAACAGTACAAGGcggaaaaacattgaaaacacagtgaaattaattgaaaatatccTTATTCAGTCATCAAATAAACCAAGGGAAGTCCCAGCAATGATTCCATTAGTACAGAACTCTACTGTAATAACGCACACGACAAAACCATCTGATATGACAGTCGtaaaagttaaagaaactcCGAAAAAAATCCACGAAGTAAATACGGACAAACTACCTGAATCTCCAGCAGACCTGACCAAAGAATCAATTAGTAGCAAGGAGGAACAAAGTCAGGAAGAAAATGACACTGCTGAAGAGCAAAACGCAACAGAAAATGATAGTGACGATGAACAAAATAATACGGAAACCGACGTGCTGTCCGAAGATGAAGAGGTTAAACCTGTCGCAATAACCCAACACTTTATAAGAGAAGATGCGGTGGAAACAGAAATGAATCCGGACAATAGTATCGTGATAAAGGTTGAGAAAGCAACGTGGGCGGACTCGGAGTGCTATACGCCATTCTTGAAGGACTCTCATGGTTTTGAGAGGGACGGACAGATGAATTACAGGATTATTGAGGGTGATACTAGTGTTGAACAAGCTGTAGCCTGTTATCGAAATGACATAAAACCAGAAGGAGTATTCGAATGCCCGCACTGCGCTCTCCTTTTCAAACATCCAAAGAGGTTCTTAATCCACAATAAATGGCATACCTTCGGCCTAACTCATATCAAACGTATGGAGATCGCTAAAGTAAGAGAACAGAGAAGATTTGAACGTAAAGAGGCTAGGGTCATAGAGCGGATGAATTCCAAAGATGTCACGGATATGAAAGTCGATGGGAAGACCTTTCCGTGTAAGGATTGTGATAAAGTTTTCAGTGCTAAGGGCAGCTTAAAGAATCATAGGCAGAGGACACACCCCACTCGCATTCGTGAATGCAGGATCTGCCACAAAACCATATCGAGCTGGACTGATCTCCGGGCACACCTGTCGACTCATACCGCGGAGTCAGGGCTCGGCTTCCAATGCAGCGAGTGTCCTAAGAGGTTTAAGTACGCTCACTCACTGGCTAAACACTCTGATACTCATTTGGAAAAAGTCCACGCCTGCAAGGACTGTCCGAAGAAGTTTGGTTCCCAAGCTCTGTTGAAGATGCACAATAAGACCCACGAGCGTGTGTTGCGCGGCGCCACATTTAGGTGCACTTACTGCGCTAAAGGATTCTTTGAGTCTTATAGTTTACAGGTGCACGAAAGAACTCATCGTAACGAGAGACCGTACACGTGCGACATCTGTAACACCAGCTATGGAACCAACTCTAGTCTCAAGAGGCATGTCAAAGTGTCCCACAACACAGCGAAGCCCTATCAGTGCAGTGTGTGTCGTCGGAACTTCTCCACGGAGTCCATTAGAGACAAGCATGAGCTGCGTCTACATGGCAAGCCTGAGGACTTCAAGTTTCCATGCAAGCAGTGTTCTAGCAAgtaCCTGAAACTGAAGGATCTTCAAAAACATGTCTACAAAATGCATCCTAAAGGTAAAAGGAAGAAAAAGAGCGACGAAGAAGATGAGGAAGCCAGTGAATCGGAGTAG
Protein Sequence: MLHNTGTYSPNEAPVNMGAPVNMTPMGSHMNIAHNINNLSKITHQSAPAPSGHYNLPEYAHYNHSPITMPPQMTQFPNYQQLGFQHTYVSQNANNTNDLPFPNGMFPMNLNIQNEHNANVVNYAYDKRVIESVRQENYKEQSARKMPLNIPQIPNKVYNKQSGGNNDYLHNNMYEETHNNLDLSMKSQEKLQINSTRRKNIENTVKLIENILIQSSNKPREVPAMIPLVQNSTVITHTTKPSDMTVVKVKETPKKIHEVNTDKLPESPADLTKESISSKEEQSQEENDTAEEQNATENDSDDEQNNTETDVLSEDEEVKPVAITQHFIREDAVETEMNPDNSIVIKVEKATWADSECYTPFLKDSHGFERDGQMNYRIIEGDTSVEQAVACYRNDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTHIKRMEIAKVREQRRFERKEARVIERMNSKDVTDMKVDGKTFPCKDCDKVFSAKGSLKNHRQRTHPTRIRECRICHKTISSWTDLRAHLSTHTAESGLGFQCSECPKRFKYAHSLAKHSDTHLEKVHACKDCPKKFGSQALLKMHNKTHERVLRGATFRCTYCAKGFFESYSLQVHERTHRNERPYTCDICNTSYGTNSSLKRHVKVSHNTAKPYQCSVCRRNFSTESIRDKHELRLHGKPEDFKFPCKQCSSKYLKLKDLQKHVYKMHPKGKRKKKSDEEDEEASESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041226;
90% Identity: iTF_00041226;
80% Identity: -