Basic Information

Insect: Agrotis exclamationis
Gene Symbol: -
Assembly: GCA_950005045.1
Location: OX465442.1:13337951-13351606[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.61 84 5.4 2.9 1 23 399 421 399 421 0.95

2 9 2.6e-06 0.00036 22.3 0.9 1 23 468 491 468 491 0.97

3 9 0.053 7.3 8.7 3.2 2 23 497 518 497 518 0.97

4 9 3e-05 0.0041 19.0 2.6 1 23 526 548 526 548 0.97

5 9 3.3e-06 0.00045 22.0 1.6 1 23 553 575 553 575 0.97

6 9 0.00015 0.02 16.8 1.4 1 23 584 606 584 606 0.99

7 9 5.5e-06 0.00075 21.3 0.7 1 23 612 635 612 635 0.97

8 9 0.12 17 7.6 0.5 1 14 641 654 641 664 0.82

9 9 3.8 5.2e+02 2.9 2.0 1 23 672 695 672 695 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.61	84	5.4	2.9	1	23	399	421	399	421	0.95
2	9	2.6e-06	0.00036	22.3	0.9	1	23	468	491	468	491	0.97
3	9	0.053	7.3	8.7	3.2	2	23	497	518	497	518	0.97
4	9	3e-05	0.0041	19.0	2.6	1	23	526	548	526	548	0.97
5	9	3.3e-06	0.00045	22.0	1.6	1	23	553	575	553	575	0.97
6	9	0.00015	0.02	16.8	1.4	1	23	584	606	584	606	0.99
7	9	5.5e-06	0.00075	21.3	0.7	1	23	612	635	612	635	0.97
8	9	0.12	17	7.6	0.5	1	14	641	654	641	664	0.82
9	9	3.8	5.2e+02	2.9	2.0	1	23	672	695	672	695	0.93

Sequence Information

Coding Sequence: ATGTTGCACAATACAGGGACGTATAGTCCTAACGAGGCGCCTGTAAACATGGGAGCGCCCGTCAATATTACACCAATGGGTAGTCATATGAATATCGCTCATAACATTAATAATTTGAGCAAAATAGCACACCAAAGCGTCCCCGCGCCTAGCGAGCACTACAACCTCCCGGATTATGCACATTACAACCACTCTCCTATCACCATGCCACCGCAAATGACCCAATTTCCCAACTATCAACAACTGGGTTTCCAACATACTTACGTGACTCAAAATGCAAATAACACGAACGATTTGCCATTCCCAAACGGTATGTTCCCTATGAATTTGAATATACAGAACGAGCATAACGCTAATGTTGTGAACTACGCTTACGATAAGCGAGTAATTGAATCAGTGCGACAAGAAAGCTACAAAGAGCAAAATGTACGGAAAATGCCGTTAAACATACCTCAGATACCAAATAAAGTATATAATAAACACAGTGGCGGTAACAACGACTATCTACATAACAATATGTACGAAGAAACTCATAATCTAGATTTAAGCATGAAATCTCAAGAAAAACTTCAAATGAACAGCACAAGGCggaaaaacattgaaaacacggtgaaattaattgaaaatatcCTTATTCAGTCATCTAATAAACCGAGGGAAGTACCCGCAATGATTCCGTTAGTACAAAACTCTACTGTAATTACGCATACCACGAAACCATCTGATATGACAGTCGTGAAAGTTAAGGAAACTGCGACAAAAATCCCTGAAGTAGACAAATTACCAGAATCTCCAGCAGACCTGACCAAAGAATCAAGTAGAAGCAAGGATGAACAAAGTCAGGAAGAAAATGACACTGCTGATGAACAAAACGCAACAGAGAATGATAGTGACGAAGAACAAAATAATACAGAAACCGACTTACTGTCCGAAGATGAAGAGGTGAAACCCGTAGCAATAACTCAACACTTCATAAGAGAAGATGCGGCAGAAACAGAAATTAACACGGACAATAGTATTGTTATAAAGGTTGAGAAAGCAACGTGGGCAGACTCGGAGTGCTATACGCCATTCTTGAAGGACTCTCATGGGTTTGAGAGGGATGGACAGATGAACTACAGGATTATTGAGGGTGATTGTAGTGTGGAACAAGCTGTAGCTTGTTATCGAAATGACATAAAACCAGAAGGCGTATTCGAATGCCCGCACTGCGCACTCCTTTTCAAACATCCAAAAAGGTTTTTGATCCACAATAAATGGCATACATTCGGATTAACCCATATCAAACGTATGGAGATTGCTAAAGTAAGAGAACAGCGAAGATTTGAACGGAAAGAGGCTAGGGTCATAGAGCGGATGAATTCCAAAGATGTGACAGATCTGAAAGTCGATGGGAAGACATTTCCCTGTAAGGATTGTGATAAAGTTTTCAGTGCTAAGGGGAGCTTGAAGAATCATAGGCAGAGGACACACCCCACTCGCATAAGAGAATGCAGAATCTGTCACAAAACCATATCGAGCTGGTCTGATCACCGGGCACACCTGTCGACTCATACTGCGGAGTCGGGGTTAGGCTTCCAATGTAGCGAGTGCCCTAAAAGGTTCAAGTACGCTCACTCCCTGGCTAAACACTCTGATACTCATTTGGAAAAAGTCCACGCGTGTAAGGACTGTCCGAAGAAGTTCGGCTCTCAAGCCTTGTTGAAGATGCATATGAAGACTCACGAGCGTGTGTTACGCGGCGCCACTTTTAGGTGCACTTATTGCGCTAAAGGGTTCTTTGAGTCTTATAGTTTACAGGTGCATGAAAGAACTCATCGTAACGAGAGACCGTACTCGTGCGACATCTGCAGCACCAGCTATGTAACTAACTCTAGTCTCAAGAGACATGTCAAAGTgTCCCACAACACAGCGAAGCCCTATCAGTGCAGCGTGTGCCGTCGGAACTTCTCCACGGAGTCTATCAGAGATAAACACGAGTTGCGTCTACATGGCAAGCCTGAGGACTTCAAGTTTCCATGCAAGCAGTGTTCTAGCAAgtATCTAAAACTGAAAGATCTTCAAAAACATGTCTACAAAATGCATCCTAAAGGTAAAAGGAAGAAAAAGAGCGACGAAGAAGATGAGGAAGCGAGCGAATCGGAATAG
Protein Sequence: MLHNTGTYSPNEAPVNMGAPVNITPMGSHMNIAHNINNLSKIAHQSVPAPSEHYNLPDYAHYNHSPITMPPQMTQFPNYQQLGFQHTYVTQNANNTNDLPFPNGMFPMNLNIQNEHNANVVNYAYDKRVIESVRQESYKEQNVRKMPLNIPQIPNKVYNKHSGGNNDYLHNNMYEETHNLDLSMKSQEKLQMNSTRRKNIENTVKLIENILIQSSNKPREVPAMIPLVQNSTVITHTTKPSDMTVVKVKETATKIPEVDKLPESPADLTKESSRSKDEQSQEENDTADEQNATENDSDEEQNNTETDLLSEDEEVKPVAITQHFIREDAAETEINTDNSIVIKVEKATWADSECYTPFLKDSHGFERDGQMNYRIIEGDCSVEQAVACYRNDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTHIKRMEIAKVREQRRFERKEARVIERMNSKDVTDLKVDGKTFPCKDCDKVFSAKGSLKNHRQRTHPTRIRECRICHKTISSWSDHRAHLSTHTAESGLGFQCSECPKRFKYAHSLAKHSDTHLEKVHACKDCPKKFGSQALLKMHMKTHERVLRGATFRCTYCAKGFFESYSLQVHERTHRNERPYSCDICSTSYVTNSSLKRHVKVSHNTAKPYQCSVCRRNFSTESIRDKHELRLHGKPEDFKFPCKQCSSKYLKLKDLQKHVYKMHPKGKRKKKSDEEDEEASESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043911; iTF_00040264; iTF_00042089; iTF_00042940;
90% Identity: iTF_00043911; iTF_00040264; iTF_00042089; iTF_00042940;
80% Identity: -