Basic Information

Insect: Agrotis ipsilon
Gene Symbol: znf423
Assembly: GCA_028554685.1
Location: CM052984.1:954023-960150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.12 12 7.5 2.5 1 23 83 106 83 106 0.92

2 14 0.16 16 7.1 0.1 2 23 133 155 132 155 0.94

3 14 0.12 12 7.5 3.6 2 23 178 199 177 199 0.92

4 14 0.00068 0.069 14.6 0.3 1 23 203 225 203 225 0.95

5 14 0.68 69 5.1 1.3 1 23 312 335 312 335 0.93

6 14 0.0084 0.85 11.2 0.1 2 23 362 384 361 384 0.95

7 14 0.022 2.2 9.9 3.0 2 23 407 428 406 428 0.97

8 14 0.018 1.8 10.1 0.0 1 23 432 454 432 454 0.96

9 14 0.001 0.11 14.0 3.4 1 23 459 482 459 482 0.97

10 14 0.02 2 10.0 0.9 1 23 488 511 488 511 0.91

11 14 0.026 2.6 9.6 1.4 2 23 519 541 518 541 0.96

12 14 0.0014 0.14 13.6 1.5 1 23 547 569 547 569 0.96

13 14 0.00017 0.017 16.5 0.2 1 23 575 597 575 597 0.99

14 14 5e-05 0.0051 18.1 3.2 1 23 603 626 603 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.12	12	7.5	2.5	1	23	83	106	83	106	0.92
2	14	0.16	16	7.1	0.1	2	23	133	155	132	155	0.94
3	14	0.12	12	7.5	3.6	2	23	178	199	177	199	0.92
4	14	0.00068	0.069	14.6	0.3	1	23	203	225	203	225	0.95
5	14	0.68	69	5.1	1.3	1	23	312	335	312	335	0.93
6	14	0.0084	0.85	11.2	0.1	2	23	362	384	361	384	0.95
7	14	0.022	2.2	9.9	3.0	2	23	407	428	406	428	0.97
8	14	0.018	1.8	10.1	0.0	1	23	432	454	432	454	0.96
9	14	0.001	0.11	14.0	3.4	1	23	459	482	459	482	0.97
10	14	0.02	2	10.0	0.9	1	23	488	511	488	511	0.91
11	14	0.026	2.6	9.6	1.4	2	23	519	541	518	541	0.96
12	14	0.0014	0.14	13.6	1.5	1	23	547	569	547	569	0.96
13	14	0.00017	0.017	16.5	0.2	1	23	575	597	575	597	0.99
14	14	5e-05	0.0051	18.1	3.2	1	23	603	626	603	626	0.98

Sequence Information

Coding Sequence: ATGAAACAAGAAACAGGCGACATAACTCCTAAAGAAAGCATAGGAGAAAAGCAGGAAATGAACGACATGACAGTAACAGAAAATATAGATGATATACAAGGAACTAACGAGACAGACAGTacagaagataaaaataaagaagaaaaaataactcCAAGAACGGAACttttaaaacatagaaaaattattaaagaaatactTGATAATTCTAACGCGACTCCAATACGACGTTACGGAGGTATTGGATACAACTGCTGCTATTGTTCAGAACAGTTTGAACAAACTGCGGTCCTGAAGAAACATACACTGGACAATCACAATGATGTCGCAGCAGCAAACTTTATGAAGAAAATGAACATGTCTGAGTACGTCGTCAAATTAGACATAACTGCACTAACATGCAAGATATGCAATGCTGAAATGAGTGATCTAGACAACTTTGTTCTACATCTTAATAATATACATGAGAAGAAAATAGATGTGAACTATACAAACCACATCTTCcctttaaaatttgatgacaGTTTACTCAAGTGCATTTTTTGCGGTCATACTTTTACTACATTCAGAACCCTGGTCGGACACATGCATGTTCATTACAGGAATTATGTCTGCACTATTTGTGATGCTGGATTCGTCAATAGAAATTCATTTACTCAGCATACAGTTAACCATAAAACGGGTAAACCTCAAGCAGTTACAGTCGCGATTAAAAAAGAAGTCAACCAACCAGATCAAgctaaaaaaggaaaaataacaaCTACAAAAGTTCCTGCTATTGGTGCGGGACACCCTAGAGTAGCAGGATCAGACTGCAATAATCCTATAGCTTCAAAATGGTTCAGTTATGAGATCTACAAACATAAAtctaatattattgaaataatgcGAAGTTCTAATGCTACACCAATTAAGATGTGGGGAGATAAGGGTTACATGTGTTGTCACTGTGAAGATCAGTACCCAGAGGCTGCAGATCTTAAGAAACACACTCTGGAAGAGCATGACGACGTATCCAAAACCTGTTTCTTGAAAAACATGAGCATGTACCATTACATCGTCAAATTAGACATCACTGATCTACAGTGCAAGATTTGTAGCAAAAGTATTGACACAGTTGAAGAGCTAATGGAACACTTACAGAATGAACACAAAAAACTAATATACACAGACATCAAAAACCACGTAATACCTTTCAAATTAAACACAAAACCTCTCGAATGCTTTATCTGCAAGAATGTATTCCACAAATTCAAATTGTTGACCATCCATATGAATAAACATTACAGAAACTATGTTTGTGATATCTGCGATGCCGGTTTCGTGAATATCTCTGGAATTAGACTTCATAAGTCCATACACAAGATTGGAAGTTACAACTGTACAAAATGTAATATGACTTTCGACACCAAAGCTAAGAGAAATCGGCATGTAAAGACTAAGCATACCAAAGAAATTCGGCACACTTGCGGATATTGTAAGGAATCTTTCAACGATTACAGAAAAAAGGAAGCTCATCTCATAGCTGCCCATGGCATGACACAACCAAAGCTGAAATGTCAAGCTTGTGACAAATTATTCGATCACCAAAAACGTTTGGCCGTCCACGTGAAAAGAGACCACTTGATGGAAAGACCACATGCTTGCACAGTGTGCGAAAAGAAATTCTTCGCTTTGGGCGAACTGAGAAATCATATGACGAAGCATACAGGAGAAAGGCCTTACAAGTGTGAGATTTGTTTAAAGGCTTATGGATTGGCGAAGACCTTGAGAGAGCATATGAGGATCCATAATGATGATAGGCGTTTTAAATGTGAGCAATGTGGACAGGCTTTCGTCCAGAAGTGCAGTTGGCGAAGTCATATGAAATCTAAGCACGGGGAgaaagtttaa
Protein Sequence: MKQETGDITPKESIGEKQEMNDMTVTENIDDIQGTNETDSTEDKNKEEKITPRTELLKHRKIIKEILDNSNATPIRRYGGIGYNCCYCSEQFEQTAVLKKHTLDNHNDVAAANFMKKMNMSEYVVKLDITALTCKICNAEMSDLDNFVLHLNNIHEKKIDVNYTNHIFPLKFDDSLLKCIFCGHTFTTFRTLVGHMHVHYRNYVCTICDAGFVNRNSFTQHTVNHKTGKPQAVTVAIKKEVNQPDQAKKGKITTTKVPAIGAGHPRVAGSDCNNPIASKWFSYEIYKHKSNIIEIMRSSNATPIKMWGDKGYMCCHCEDQYPEAADLKKHTLEEHDDVSKTCFLKNMSMYHYIVKLDITDLQCKICSKSIDTVEELMEHLQNEHKKLIYTDIKNHVIPFKLNTKPLECFICKNVFHKFKLLTIHMNKHYRNYVCDICDAGFVNISGIRLHKSIHKIGSYNCTKCNMTFDTKAKRNRHVKTKHTKEIRHTCGYCKESFNDYRKKEAHLIAAHGMTQPKLKCQACDKLFDHQKRLAVHVKRDHLMERPHACTVCEKKFFALGELRNHMTKHTGERPYKCEICLKAYGLAKTLREHMRIHNDDRRFKCEQCGQAFVQKCSWRSHMKSKHGEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043825; iTF_00301534;
90% Identity: iTF_00043825;
80% Identity: -