Basic Information

Insect: Agrotis ipsilon
Gene Symbol: -
Assembly: GCA_028554685.1
Location: CM052965.1:5835252-5844594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.064 6.5 8.4 4.5 1 23 234 257 234 257 0.97

2 12 0.03 3.1 9.4 3.9 1 23 264 286 264 286 0.92

3 12 9.1e-05 0.0092 17.3 0.9 2 23 293 314 292 314 0.97

4 12 2.2e-07 2.3e-05 25.5 0.4 1 23 320 342 320 342 0.98

5 12 3.1e-05 0.0032 18.8 0.4 1 23 351 373 351 373 0.96

6 12 7.7e-06 0.00078 20.7 0.2 2 23 380 401 379 401 0.96

7 12 0.00065 0.066 14.7 7.5 1 23 407 429 407 429 0.98

8 12 3.5e-09 3.5e-07 31.2 0.6 1 23 435 457 435 457 0.98

9 12 7.6e-05 0.0077 17.6 1.2 1 23 463 485 463 485 0.98

10 12 3.7e-06 0.00038 21.7 1.6 1 23 491 512 491 512 0.98

11 12 0.0017 0.17 13.3 0.9 3 23 520 540 518 540 0.97

12 12 0.002 0.2 13.1 2.4 1 23 546 568 546 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.064	6.5	8.4	4.5	1	23	234	257	234	257	0.97
2	12	0.03	3.1	9.4	3.9	1	23	264	286	264	286	0.92
3	12	9.1e-05	0.0092	17.3	0.9	2	23	293	314	292	314	0.97
4	12	2.2e-07	2.3e-05	25.5	0.4	1	23	320	342	320	342	0.98
5	12	3.1e-05	0.0032	18.8	0.4	1	23	351	373	351	373	0.96
6	12	7.7e-06	0.00078	20.7	0.2	2	23	380	401	379	401	0.96
7	12	0.00065	0.066	14.7	7.5	1	23	407	429	407	429	0.98
8	12	3.5e-09	3.5e-07	31.2	0.6	1	23	435	457	435	457	0.98
9	12	7.6e-05	0.0077	17.6	1.2	1	23	463	485	463	485	0.98
10	12	3.7e-06	0.00038	21.7	1.6	1	23	491	512	491	512	0.98
11	12	0.0017	0.17	13.3	0.9	3	23	520	540	518	540	0.97
12	12	0.002	0.2	13.1	2.4	1	23	546	568	546	568	0.98

Sequence Information

Coding Sequence: ATGGATTCAGAAATGATGTTGGACGATGACATAAAAATAGACGAAGGAGAGAAAGGAGCCGGAGAAGACCACATTGAAATAGAAATACCGTTCAACTTGTACGAGTACCTTAATTCAGAGCAGTGTAATGTTCAGAGTATGTGTCGAATATGTCTGGCTACAGACAACGAGGTTCTGTACCCGTTAGTTGCTaccaaagaaaacaatattttggcGCATATGTTTACGGCATTTACTACTGTTCAACTTTTTCCAGGAGATGGTTTACCATCAAACATATGTGAGCTATGTCAGGCTCAAGTACTGCAGTGTTATGAATTCAAGAGCAAGTGCGAAAAGTCCGACTGCATGCTCAAGTCATTACTGAAAGGAGAATTCACTACCAAAGAGGATATTATTATACCTGATCATAGCATGCAAATAAAGGAAGAGGGAAATTTAGAAAATTACACTAATTTAGaagataatgataataattattttaatggtatTGATGTTAAACAAGAAACTGAGTTGCTGGAAGATGTGCAGTATTTGGAAGATCTCAGTGATAACAGTGATACTGGTAACCTTTGTATTGTACAAAAAACAAGGTGTAAGAAaaaaaaaaaGTTAATTACTGATAATGATGAGTCTAGCAGCTTTCAAAAGGTATCAAATAagaaacttaaaagaaaatctgGGAAGAAAGGACATTCTTTTAAATGCAGGATATGTTCTAAGaaATTCCAGAATCTGAAAGCATTCCACGGTCATGTGAAGAGCAAGCATCCAAGCACCAAAAATCTACATTTCTGTAACCAGTGCACTGAGATGTTCAACTCTGAACATGATCTCAAAGTACATTCGTCATTACACAGTAAAGGGAACACTTGGAAGTGTAACCAATGTCCTAAGGAATTTAATGCCCGCACGATGCTCCGGCGTCATATCTCGCGACACATGGAGTCGAAACGTTTCTCATGCGAGGTGTGTGGTAAAGCGTTCACGGAACAGTACGCACTGAGGAGACACACGCGTGTCCATACTGGCGAGATACTCGAGAAGAAACATGCGTGCACCATTTGTGATAAGAGGTACAGTGAGAGCGGTCTTCTCGCAGCACACATGTCCCGCCACATAGGCCTGCGCCCCTGGGAGTGTAGTATCTGCGGCAAACGGTTCCCATCCAACCGCCTGCTAACGTCACATCGACTTGTTCACTCTGACCGAAAACCATACGCCTGCCAGTATTGCGATAAACGTTTCCGTCACGAGTCAACGCGTAACACCCACCACCGCACGCACACCGGCGAGAAACCCTACATATGTTCCGTCTGCGGGAAGAGCTTCATACAGAACTCCAACCTTACCCTACACATGAGAACACATACCGgtgaGCGCCCCTACTCCTGTTCGATCTGTCAGCGCAAGTTTACTTCAGGATCCACATTGAAGAGTCATGAACAGATACATTCTGGAGAACGACCATACAGCTGTGATACTTGTGGGAAAAGTTTTACGCGCAAGAATTTGAGCGCGCATTTGCGCAAGCACACGGGCGAGCGACCATACGGGTGTAGCGTGTGCTCCAAGAAGTTCGCTAACTCGACGAGACTGCGGGACCATAACCGCGTACATACTGGTGAAAAACCATTCGAGTGCTCAATGTGCTCGCTAAAATTCGCAACGAAATCTCAACAGTTAAAACACTCCAAAACTCATCAAAAAAAGAAGAGAGCACACACTTCAGATAAAGACAGAGAGGTGAAGAAAGAGCGAGAAAACCGTGAACTAGTCATATTACAACATGTTGAACCCATATCTGTAATCACTGACAGAATACTGTTCAACAAGGAGCATGGAGAACTGATAACAGTGAAGGAAGATGTACCAGGAGACCAGTCACCCGAAGATCAATTAAACATTGTACAAGAAGTCCCCTTAGAAGTAACAGGAGAACTAGTACTACAAGACGAAAGTACCATGAAAGAACTTTTAGTTGTCGACAATAGCCAAACTAACTACCAAGGTGAAAGTATATGCTTGAATACTAGCAACCTCAATATCATTGATGACGTGAACTATGAGGGGCAGAACTTGATGACCGTAAACGAGGGAGGGGTCAGTATTTCCACCGCGAACCTCGAAGGTACCACTGTGAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACACAGCTCTGGTGGACAAGTCACTATTAGTAAGATAACTAGTAAAATGACAGCGAACTTTtaa
Protein Sequence: MDSEMMLDDDIKIDEGEKGAGEDHIEIEIPFNLYEYLNSEQCNVQSMCRICLATDNEVLYPLVATKENNILAHMFTAFTTVQLFPGDGLPSNICELCQAQVLQCYEFKSKCEKSDCMLKSLLKGEFTTKEDIIIPDHSMQIKEEGNLENYTNLEDNDNNYFNGIDVKQETELLEDVQYLEDLSDNSDTGNLCIVQKTRCKKKKKLITDNDESSSFQKVSNKKLKRKSGKKGHSFKCRICSKKFQNLKAFHGHVKSKHPSTKNLHFCNQCTEMFNSEHDLKVHSSLHSKGNTWKCNQCPKEFNARTMLRRHISRHMESKRFSCEVCGKAFTEQYALRRHTRVHTGEILEKKHACTICDKRYSESGLLAAHMSRHIGLRPWECSICGKRFPSNRLLTSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYICSVCGKSFIQNSNLTLHMRTHTGERPYSCSICQRKFTSGSTLKSHEQIHSGERPYSCDTCGKSFTRKNLSAHLRKHTGERPYGCSVCSKKFANSTRLRDHNRVHTGEKPFECSMCSLKFATKSQQLKHSKTHQKKKRAHTSDKDREVKKERENRELVILQHVEPISVITDRILFNKEHGELITVKEDVPGDQSPEDQLNIVQEVPLEVTGELVLQDESTMKELLVVDNSQTNYQGESICLNTSNLNIIDDVNYEGQNLMTVNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00375561;
90% Identity: iTF_00041094; iTF_00040094; iTF_00043775;
80% Identity: -