Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940922.1:8590727-8599218[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.074 9.1 8.4 4.5 1 23 230 253 230 253 0.97

2 12 0.035 4.3 9.4 3.9 1 23 260 282 260 282 0.92

3 12 0.0002 0.025 16.4 0.4 2 23 289 310 288 310 0.96

4 12 2.6e-07 3.2e-05 25.6 0.4 1 23 316 338 316 338 0.98

5 12 1.8e-05 0.0022 19.8 0.8 1 23 347 369 347 369 0.96

6 12 1.7e-05 0.0021 19.8 1.5 2 23 376 397 375 397 0.96

7 12 0.00075 0.092 14.7 7.5 1 23 403 425 403 425 0.98

8 12 4e-09 5e-07 31.2 0.6 1 23 431 453 431 453 0.98

9 12 6e-05 0.0073 18.1 1.0 1 23 459 481 459 481 0.98

10 12 1.2e-06 0.00015 23.5 1.1 1 23 487 508 487 508 0.98

11 12 3e-05 0.0037 19.1 1.3 1 23 514 536 514 536 0.99

12 12 0.0013 0.17 13.9 1.6 1 23 542 564 542 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.074	9.1	8.4	4.5	1	23	230	253	230	253	0.97
2	12	0.035	4.3	9.4	3.9	1	23	260	282	260	282	0.92
3	12	0.0002	0.025	16.4	0.4	2	23	289	310	288	310	0.96
4	12	2.6e-07	3.2e-05	25.6	0.4	1	23	316	338	316	338	0.98
5	12	1.8e-05	0.0022	19.8	0.8	1	23	347	369	347	369	0.96
6	12	1.7e-05	0.0021	19.8	1.5	2	23	376	397	375	397	0.96
7	12	0.00075	0.092	14.7	7.5	1	23	403	425	403	425	0.98
8	12	4e-09	5e-07	31.2	0.6	1	23	431	453	431	453	0.98
9	12	6e-05	0.0073	18.1	1.0	1	23	459	481	459	481	0.98
10	12	1.2e-06	0.00015	23.5	1.1	1	23	487	508	487	508	0.98
11	12	3e-05	0.0037	19.1	1.3	1	23	514	536	514	536	0.99
12	12	0.0013	0.17	13.9	1.6	1	23	542	564	542	564	0.97

Sequence Information

Coding Sequence: ATGGATTCAGAAATTATCTTGGACGAtgacttaaaaataaatgaagaagAGAAAGTAACCGGAGAAGACTACATGGAAATAGAAATACCGTTCAACTTGTACGAGTACCTTAGTTCAGAGCAGTGCAATGTTCAGAGCATGTGTCGAATATGTCTGGCTACAGACAACGAGGTTCTGTACCCTTTATTTGCTACCAAAGAAAACAACATACTGGCGCATATGTTTACGGCATTTACTACTGTACAACTTCTTCCAGGAGATGGTTTACCATCAAATATATGTGAGCCATGTCAGGCTCAAGTACTGCAGTGTTATGAGTTCAAGAGCAAGTGCGAGAAGTCCGACTGCATGCTCAAGTCATTACTGAAAGGAGGATTCACTACCAAAGAGGATGTAGCTGATCATAGCATGCAAATAAAGGAAGAAGGAAATTTAGAAGATGatactaaaatagaaaatgctTATTTAAATGATATTATTGATGTTAAACGAGAAACTGAGCTGTTAGAAGATGTGCAGTATTTAGAAGATCTCAGTGATAACAGTGTTAGTGGTAATCTTTGTATAGTACAAAAAACAAGgcgtaagaaaaaAAAAAAGTTAATTACTGACAATGATGaatCTAGCAGCTTTCAAAAGGTATCAAATAAGAAAATTAGGAGAAAAcctggaaagaaagaaaattcttTTAAATGCAGGATATGTTCTAAGAAATTCCAGAATCTGAAAGCATTCCATGGGCATGTGAAGAGCAAACATCCAAGTACCAGACATCTACATTTCTGTAACCAGTGCACTGAGATGTTCAACTCTGAACATGATCTCAAAGTACATTCGTCATTACACAGTAAAGGGAACACTTGGAATTGTAACCAATGTCCTAAGGAATTTAATGCCCGCGCGATGCTCCGGCGTCATATCTCGCGCCACATGGAGTCAAAACGTTTCTCATGCGAGGTTTGTGGCAAGGCGTTCACGGAACAGTACGCGCTGAGGAGACACACGCGCGTCCACACGGGTGAGATCCTCGAGAAGAAACATGCGTGCACTATTTGTGATAAGAGGTACAGTGAGAGCGGTCTTCTCACAGCGCACATGTCCCGTCACATAGGCCTGCGCCCCTGCGAGTGTAGTATCTGCGGCAAACGGTTCCCATCCAACCGCCTGCTAACATCTCATCGACTTGTTCACTCGGATCGAAAGCCATACGCCTGCCAGTATTGCGATAAACGTTTCCGTCACGAGTCAACACGCAACACCCACCACCGCACGCACACCGGCGAGAAACCCTACATTTGCTCCGTCTGCGGGAAGAGCTTCATACAGAACTCCAACCTTACGCTACACATGAGAACACATACTGGTGAGCGCCCTTACTCCTGTTCGGTCTGTGAGCGCAAGTTCACTTCAGGCTCTACATTGAAGAGCCATGAACGGATACATTCTGGAGAACGACCTTACAGCTGTGATATTTGTGGGAAAAGTTTCACGCGCAAGAACTTGAGCGCCCACTTGCGCAAGCACACGGGCGAGCGACCATACGAGTGCAGCGTGTGCTCCAAGAAGTTCGCGAACTCGACGCGACTGCGGGACCATCGCCGCGTGCATACCGGTGAAAAACCATTCGACTGCCCAATGTGCTCTCTAAAATTCGCAACGAAATCGCAACAGTTGAAACACTCGAAAACTCATCAAAAAAAGAAGAGAGCACACGCTTCAGATAAAGACAGAGAGGTGAAGACAGAGCGAGAGAACCATGAACTAGTCATATTACAACATGTTGAACCCATGCCTGTAATCACTGACAGAATACTGTTCAACAAGGAGCACGGAGAACTGataacagtgaaggaaaatgtaCAAGAGTCACCCGAAGATCAAACATTAAACATTGTACAAGAAGTCCCGTTAGAAGTTACAGGAGAGCTAGTACTACACGATGAGAGTACCATGAAAGAACTTTTAGTAGTCGACAATAGCCAAACTAACTACCAAGGTGAAAGTATATGCTTGAATACTAGCAACATGAATATTATCGATGACGTGAACTATGAGGGAGAGAACTTGGTGACCGTGAACGAGGGAGGGGTCAGTATTTCCACCGCCAACCTCGAAGGTACCACTGTGAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACACAGTTCCGGCGGACAAGTCACTATTAGTAAGATAACTAGCAAAATGACAGCGAACTTTTAA
Protein Sequence: MDSEIILDDDLKINEEEKVTGEDYMEIEIPFNLYEYLSSEQCNVQSMCRICLATDNEVLYPLFATKENNILAHMFTAFTTVQLLPGDGLPSNICEPCQAQVLQCYEFKSKCEKSDCMLKSLLKGGFTTKEDVADHSMQIKEEGNLEDDTKIENAYLNDIIDVKRETELLEDVQYLEDLSDNSVSGNLCIVQKTRRKKKKKLITDNDESSSFQKVSNKKIRRKPGKKENSFKCRICSKKFQNLKAFHGHVKSKHPSTRHLHFCNQCTEMFNSEHDLKVHSSLHSKGNTWNCNQCPKEFNARAMLRRHISRHMESKRFSCEVCGKAFTEQYALRRHTRVHTGEILEKKHACTICDKRYSESGLLTAHMSRHIGLRPCECSICGKRFPSNRLLTSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYICSVCGKSFIQNSNLTLHMRTHTGERPYSCSVCERKFTSGSTLKSHERIHSGERPYSCDICGKSFTRKNLSAHLRKHTGERPYECSVCSKKFANSTRLRDHRRVHTGEKPFDCPMCSLKFATKSQQLKHSKTHQKKKRAHASDKDREVKTERENHELVILQHVEPMPVITDRILFNKEHGELITVKENVQESPEDQTLNIVQEVPLEVTGELVLHDESTMKELLVVDNSQTNYQGESICLNTSNMNIIDDVNYEGENLVTVNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043775;
90% Identity: iTF_00041990;
80% Identity: -